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Literature for inhibitor I01.003: ovomucoid inhibitor unit 3

Summary Alignment Tree Sequences Sequence features Distribution Structure Literature

(Topics flags: S Structure. To select only the references relevant to a single topic, click the link above. See explanation.)

    2013
  1. Qasim,M.A., Wang,L., Qasim,S., Lu,S., Lu,W., Wynn,R., Yi,Z.P. and Laskowski,M., Jr.
    Additivity-based design of the strongest possible turkey ovomucoid third domain inhibitors for porcine pancreatic elastase (PPE) and Streptomyces griseus protease B (SGPB)
    FEBS Lett587, 3021-3026. PubMed  Europe PubMed DOI
    2. 2011
  2. Hemmi,H., Kumazaki,T., Kojima,S., Yoshida,T., Ohkubo,T., Yokosawa,H., Miura,K. and Kobayashi,Y.
    Increasing the hydrolysis constant of the reactive site upon introduction of an engineered Cys14-Cys39 bond into the ovomucoid third domain from silver pheasant
    J Pept Sci17, 595-600. PubMed  Europe PubMed DOI
    3. 2009
  3. Click,T.H. and Kaminski,G.A.
    Reproducing basic pKa values for turkey ovomucoid third domain using a polarizable force field
    J Phys Chem B113, 7844-7850. PubMed  Europe PubMed DOI
  4. Deng,N.J. and Cieplak,P.
    Insights into affinity and specificity in the complexes of alpha-lytic protease and its inhibitor proteins: binding free energy from molecular dynamics simulation
    Phys Chem Chem Phys11, 4968-4981. PubMed  Europe PubMed DOI
    5. 2007
  5. Lee,T.W., Qasim,M.A., Laskowski,M., Jr. and James,M.N.
    Structural insights into the non-additivity effects in the sequence-to-reactivity algorithm for serine peptidases and their inhibitors
    J Mol Biol367, 527-546. PubMed  Europe PubMed DOI  S
  6. Macdermaid,C.M. and Kaminski,G.A.
    Electrostatic polarization is crucial for reproducing pKa shifts of carboxylic residues in turkey ovomucoid third domain
    J Phys Chem B111, 9036-9044. PubMed  Europe PubMed DOI
    7. 2005
  7. Maynes,J.T., Cherney,M.M., Qasim,M.A., Laskowski,M., Jr. and James,M.N.
    Structure of the subtilisin Carlsberg-OMTKY3 complex reveals two different ovomucoid conformations
    Acta Crystallogr D Biol Crystallogr61, 580-588. PubMed  Europe PubMed DOI  S
    8. 2004
  8. Newton,K.A., Pitteri,S.J., Laskowski,M., Jr. and McLuckey,S.A.
    Effects of single amino acid substitution on the collision-induced dissociation of intact protein ions: turkey ovomucoid third domain
    J Proteome Res3, 1033-1041. PubMed  Europe PubMed DOI
    9. 2003
  9. [YEAR:28-2-2003]Filfil,R. and Chalikian,T.V.
    The thermodynamics of protein-protein recognition as characterized by a combination of volumetric and calorimetric techniques: the binding of turkey ovomucoid third domain to alpha-chymotrypsin
    J Mol Biol326, 1271-1288. PubMed  Europe PubMed DOI
  10. [YEAR:11-3-2003]Hemmi,H., Kumazaki,T., Yamazaki,T., Kojima,S., Yoshida,T., Kyogoku,Y., Katsu,M., Shinohara,F., Yokosawa,H., Miura,K. and Kobayashi,Y.
    Inhibitory specificity change of the ovomucoid third domain of the silver pheasant upon introduction of an engineered Cys14-Cys39 bond
    Biochemistry42, 2524-2534. PubMed  Europe PubMed DOI
  11. [YEAR:4-7-2003]Hilpert,K., Wessner,H., Schneider-Mergener,J., Welfle,K., Misselwitz,R., Welfle,H., Hocke,A.C., Hippenstiel,S. and Hohne,W.
    Design and characterization of a hybrid miniprotein that specifically inhibits porcine pancreatic elastase
    J Biol Chem278, 24986-24993. PubMed  Europe PubMed DOI
  12. [YEAR:8-8-2003]Horn,J.R., Ramaswamy,S. and Murphy,K.P.
    Structure and energetics of protein-protein interactions: the role of conformational heterogeneity in OMTKY3 binding to serine proteases
    J Mol Biol331, 497-508. PubMed  Europe PubMed DOI
  13. Laskowski,M., Jr., Qasim,M.A. and Yi,Z.
    Additivity-based prediction of equilibrium constants for some protein-protein associations
    Curr Opin Struct Biol13, 130-139. PubMed  Europe PubMed DOI
  14. [YEAR:18-3-2003]Song,J., Laskowski,M., Jr., Qasim,M.A. and Markley,J.L.
    NMR determination of pKa values for Asp, Glu, His, and Lys mutants at each variable contiguous enzyme-inhibitor contact position of the turkey ovomucoid third domain
    Biochemistry42, 2847-2856. PubMed  Europe PubMed DOI
  15. [YEAR:13-5-2003]Song,J. and Markley,J.L.
    Protein inhibitors of serine proteinases: role of backbone structure and dynamics in controlling the hydrolysis constant
    Biochemistry42, 5186-5194. PubMed  Europe PubMed DOI
    16. 2001
  16. [YEAR:26-1-2001]Bateman,K.S., Huang,K., Anderson,S., Lu,W., Qasim,M.A., Laskowski,M., Jr. and James,M.N.
    Contribution of peptide bonds to inhibitor-protease binding: crystal structures of the turkey ovomucoid third domain backbone variants OMTKY3-Pro18I and OMTKY3-psi[COO]-Leu18I in complex with Streptomyces griseus proteinase B (SGPB) and the structure of the free inhibitor, OMTKY-3-psi[CH2NH2+]-Asp19I
    J Mol Biol305, 839-849. PubMed  Europe PubMed DOI
  17. [YEAR:13-2-2001]Lu,S.M., Lu,W., Qasim,M.A., Anderson,S., Apostol,I., Ardelt,W., Bigler,T., Chiang,Y.W., Cook,J., James,M.N., Kato,I., Kelly,C., Kohr,W., Komiyama,T., Lin,T.Y., Ogawa,M., Otlewski,J., Park,S.J., Qasim,S., Ranjbar,M., Tashiro,M., Warne,N., Whatley,H., Wieczorek,A., Wieczorek,M., Wilusz,T., Wynn,R., Zhang,W. and Laskowski,M., Jr.
    Predicting the reactivity of proteins from their sequence alone: Kazal family of protein inhibitors of serine proteinases
    Proc Natl Acad Sci U S A98, 1410-1415. PubMed  Europe PubMed DOI
    18. 1998
  18. [YEAR:18-12-1998]Fujinaga,M., Huang,K., Bateman,K.S. and James,M.N.
    Computational analysis of the binding of P1 variants of domain 3 of turkey ovomucoid inhibitor to Streptomyces griseus protease B
    J Mol Biol284, 1683-1694. PubMed  Europe PubMed DOI
    19. 1997
  19. [YEAR:21-2-1997]Lu,W., Apostol,I., Qasim,M.A., Warne,N., Wynn,R., Zhang,W.L., Anderson,S., Chiang,Y.W., Ogin,E., Rothberg,I., Ryan,K. and Laskowski,M., Jr.
    Binding of amino acid side-chains to S1 cavities of serine proteinases
    J Mol Biol266, 441-461. PubMed  Europe PubMed DOI
    20. 1994
  20. Krezel,A.M., Darba,P., Robertson,A.D., Fejzo,J., Macura,S. and Markley,J.L.
    Solution structure of turkey ovomucoid third domain as determined from nuclear magnetic resonance data
    J Mol Biol242, 203-214. PubMed  Europe PubMed DOI  S
  21. Walkenhorst,W.F., Krezel,A.M., Rhyu,G.I. and Markley,J.L.
    Solution structure of reactive-site hydrolyzed turkey ovomucoid third domain by nuclear magnetic resonance and distance geometry methods
    J Mol Biol242, 215-230. PubMed  Europe PubMed DOI  S
    22. 1993
  22. [YEAR:5-12-1993]Krystek,S., Stouch,T. and Novotny,J.
    Affinity and specificity of serine endopeptidase-protein inhibitor interactions. Empirical free energy calculations based on X-ray crystallographic structures
    J Mol Biol234, 661-679. PubMed  Europe PubMed DOI
    23. 1991
  23. [YEAR:15-6-1991]Komiyama,T., Bigler,T.L., Yoshida,N., Noda,K. and Laskowski,M., Jr.
    Replacement of P1 Leu18 by Glu18 in the reactive site of turkey ovomucoid third domain converts it into a strong inhibitor of Glu-specific Streptomyces griseus proteinase (GluSGP)
    J Biol Chem266, 10727-10730. PubMed  Europe PubMed
  24. [YEAR:5-8-1991]Musil,D., Bode,W., Huber,R., Laskowski,M., Jr., Lin,T.Y. and Ardelt,W.
    Refined X-ray crystal structures of the reactive site modified ovomucoid inhibitor third domains from silver pheasant (OMSVP3*) and from Japanese quail (OMJPQ3*)
    J Mol Biol220, 739-755. PubMed  Europe PubMed  S
    25. 1990
  25. Laskowski,M., Jr., Apostol,I., Ardelt,W., Cook,J., Giletto,A., Kelly,C.A., Lu,W.Y., Park,S.J., Qasim,M.A. and Whatley,H.E.
    Amino acid sequences of ovomucoid third domain from 25 additional species of birds
    J Protein Chem9, 715-725. PubMed  Europe PubMed DOI
    26. 1987
  26. [YEAR:20-5-1987]Fujinaga,M., Sielecki,A.R., Read,R.J., Ardelt,W., Laskowski,M., Jr. and James,M.N.
    Crystal and molecular structures of the complex of alpha-chymotrypsin with its inhibitor turkey ovomucoid third domain at 1.8 A resolution
    J Mol Biol195, 397-418. PubMed  Europe PubMed  S
  27. [YEAR:13-1-1987]Kato,I., Schrode,J., Kohr,W.J. and Laskowski,M., Jr.
    Chicken ovomucoid: determination of its amino acid sequence, determination of the trypsin reactive site, and preparation of all three of its domains
    Biochemistry26, 193-201. PubMed  Europe PubMed
  28. [YEAR:13-1-1987]Laskowski,M., Jr., Kato,I., Ardelt,W., Cook,J., Denton,A., Empie,M.W., Kohr,W.J., Park,S.J., Parks,K. and Schatzley,B.L.
    Ovomucoid third domains from 100 avian species: isolation, sequences, and hypervariability of enzyme-inhibitor contact residues
    Biochemistry26, 202-221. PubMed  Europe PubMed
    29. 1986
  29. Bode,W., Wei,A.Z., Huber,R., Meyer,E., Travis,J. and Neumann,S.
    X-ray crystal structure of the complex of human leukocyte elastase (PMN elastase) and the third domain of the turkey ovomucoid inhibitor
    EMBO J5, 2453-2458. PubMed  Europe PubMed  S
    30. 1985
  30. [YEAR:1-3-1985]Bode,W., Epp,O., Huber,R., Laskowski,M., Jr. and Ardelt,W.
    The crystal and molecular structure of the third domain of silver pheasant ovomucoid (OMSVP3)
    Eur J Biochem147, 387-395. PubMed  Europe PubMed
    31. 1983
  31. [YEAR:13-9-1983]Read,R.J., Fujinaga,M., Sielecki,A.R. and James,M.N.
    Structure of the complex of Streptomyces griseus protease B and the third domain of the turkey ovomucoid inhibitor at 1.8-A resolution
    Biochemistry22, 4420-4433. PubMed  Europe PubMed  S
    32. 1982
  32. Fujinaga,M., Read,R.J., Sielecki,A., Ardelt,W., Laskowski,M., Jr. and James,M.N.
    Refined crystal structure of the molecular complex of Streptomyces griseus protease B, a serine protease, with the third domain of the ovomucoid inhibitor from turkey
    Proc Natl Acad Sci U S A79, 4868-4872. PubMed  Europe PubMed
    33. 1981
  33. [YEAR:15-6-1981]Weber,E., Papamokos,E., Bode,W., Huber,R., Kato,I. and Laskowski,M., Jr.
    Crystallization, crystal structure analysis and molecular model of the third domain of Japanese quail ovomucoid, a Kazal type inhibitor
    J Mol Biol149, 109-123. PubMed  Europe PubMed
    34. 1980
  34. Laskowski,M., Jr. and Kato,I.
    Protein inhibitors of proteinases
    Annu Rev Biochem49, 593-626. PubMed  Europe PubMed DOI

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