EMBL's European Bioinformatics Institute (EMBL-EBI) in 2024.

Thakur M, Brooksbank C, Finn RD, Firth HV, Foreman J, Freeberg M, Gurwitz KT, Harrison M, Hulcoop D, Hunt SE, R Leach A, Levchenko M, Marques D, McDonagh EM, Mithani A, Parkinson H, Perez-Riverol Y, Perova Z, Sarkans U, Tirunagari S, Tzampatzopoulou E, Venkatesan A, Vizcaino JA, Wingfield B, Zdrazil B, McEntyre J.

Nucleic acids research, 2025

doi:10.1093/nar/gkae1089.

EMBL's European Bioinformatics Institute (EMBL-EBI) in 2025.

Thakur M, Bosc N, Brooksbank C, Ernst C, Freeberg MA, Gurwitz KT, Hermjakob H, Hulcoop DG, Martin MJ, McDonagh EM, Mithani A, O'Boyle NM, Ochoa D, Payne T, Perez-Riverol Y, Sarkans U, Sokolov A, Staudt N, Stephenson JD, Tzampatzopoulou E, Vizcaíno JA, Zdrazil B, McEntyre J.

Nucleic acids research, 2025

doi:10.1093/nar/gkaf1078.

Competencies for bioinformatics core facility scientists: extension of the ISCB competency framework for bioinformatics.

Lloret-Llinares M, Carvajal-López P, Downing T, Gogol M, Ho Sui S, Nonell L, Paladin L, Reid AJ, Pomann GM, Brooksbank C.

Bioinformatics advances, 2025

doi:10.1093/bioadv/vbaf206.

Gene-environment interactions in shaping human health and disease

Foreman AL, Araújo D, Mishra A.

2024

doi:10.6019/tol.gene-envt-interaction2024-t.2024.00001.1.

Molecular building blocks of life

Mishra A.

2024

doi:10.6019/tol.molbuildblocks-t.2024.00001.1.

Making bioinformatics training FAIR: the EMBL-EBI training portal.

Swan AL, Broadbent A, Singh Gaur P, Mishra A, Gurwitz K, Mithani A, Morgan SL, Malhotra G, Brooksbank C.

Frontiers in bioinformatics, 2024

doi:10.3389/fbinf.2024.1347168.

EMBL's European Bioinformatics Institute (EMBL-EBI) in 2023.

Thakur M, Buniello A, Brooksbank C, Gurwitz KT, Hall M, Hartley M, Hulcoop DG, Leach AR, Marques D, Martin M, Mithani A, McDonagh EM, Mutasa-Gottgens E, Ochoa D, Perez-Riverol Y, Stephenson J, Varadi M, Velankar S, Vizcaino JA, Witham R, McEntyre J.

Nucleic acids research, 2024

doi:10.1093/nar/gkad1088.

The CABANA model 2017-2022: research and training synergy to facilitate bioinformatics applications in Latin America.

Campos-Sánchez R, Willis I, Gopalasingam P, López-Juárez D, Cristancho M, Brooksbank C.

Frontiers in education, 2024

doi:10.3389/feduc.2024.1358620.

The ISCB competency framework v. 3: a revised and extended standard for bioinformatics education and training.

Brooksbank C, Brazas MD, Mulder N, Schwartz R, Ras V, Morgan SL, Lloret Llinares M, Carvajal López P, Larcombe L, Ghouila A, Hancocks T, Satagopam V, De Las Rivas J, Mazandu G, Gaeta B.

Bioinformatics advances, 2024

doi:10.1093/bioadv/vbae166.

The ISCB competency framework v. 3: a revised and extended standard for bioinformatics education and training

Brooksbank C, Brazas M, Mulder N, Schwartz R, Ras V, Morgan S, Lloret-Llinares M, Lopez PC, Larcombe L, Ghouila A, Hancocks T, Satagopam V, Rivas Jdl, Mazandu G, Gaeta B.

Preprint, 2024

doi:10.5281/zenodo.10466596.

Abalone peptide increases stress resilience and cost-free longevity via SKN-1-governed transcriptional metabolic reprogramming in C. elegans.

Wang Q, Wang L, Huang Z, Xiao Y, Liu M, Liu H, Yu Y, Liang M, Luo N, Li K, Mishra A, Huang Z.

Aging cell, 2023

doi:10.1111/acel.14046.

Data-driven plant sciences: A curated collection of EMBL-EBI on-demand training

Mishra A.

2023

doi:10.6019/tol.datadrivenplantsciences-t.2023.00001.1.

Making bioinformatics training FAIR: the EMBL-EBI training portal

Swan A, Broadbent A, Gaur PS, Mishra A, Gurwitz K, Mithani A, Morgan S, Malhotra G, Brooksbank C.

Preprint, 2023

doi:10.5281/zenodo.10391149.

EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022.

Thakur M, Bateman A, Brooksbank C, Freeberg M, Harrison M, Hartley M, Keane T, Kleywegt G, Leach A, Levchenko M, Morgan S, McDonagh EM, Orchard S, Papatheodorou I, Velankar S, Vizcaino JA, Witham R, Zdrazil B, McEntyre J.

Nucleic acids research, 2023

doi:10.1093/nar/gkac1098.

"Be sustainable": EOSC-Life recommendations for implementation of FAIR principles in life science data handling.

David R, Rybina A, Burel JM, Heriche JK, Audergon P, Boiten JW, Coppens F, Crockett S, Exter K, Fahrner S, Fratelli M, Goble C, Gormanns P, Grantner T, Grüning B, Gurwitz KT, Hancock JM, Harmse H, Holub P, Juty N, Karnbach G, Karoune E, Keppler A, Klemeier J, Lancelotti C, Legras JL, Lister AL, Longo DL, Ludwig R, Madon B, Massimi M, Matser V, Matteoni R, Mayrhofer MT, Ohmann C, Panagiotopoulou M, Parkinson H, Perseil I, Pfander C, Pieruschka R, Raess M, Rauber A, Richard AS, Romano P, Rosato A, Sánchez-Pla A, Sansone SA, Sarkans U, Serrano-Solano B, Tang J, Tanoli Z, Tedds J, Wagener H, Weise M, Westerhoff HV, Wittner R, Ewbank J, Blomberg N, Gribbon P.

The EMBO journal, 2023

doi:10.15252/embj.2023115008.

Methods in Bioinformatics

Larionov A, Lock A, Luck K, Ly T, Mishra A, Moore B, Perfetto L, Rausch T, Tischer C.

2022

doi:10.6019/tol.methodsbioinformatics-t.2022.00001.1.

Introduction to multiomics data integration and visualisation

Cortes-Ciriano I, Korcsmáros T, Mishra A, Petsalaki E.

2022

doi:10.6019/tol.multiomicsintegration22-t.2022.00001.1.

Editorial: <i>C. elegans</i> as an emerging model of pharmacological innovation.

Huang Z, Ma L, Mishra A, Turnbull JE, Tu H.

Frontiers in pharmacology, 2022

doi:10.3389/fphar.2022.1029752.

Cancer genomics: course materials

Gerstung M, Mishra A.

2022

doi:10.6019/tol.cancergenomics-t.2021.00001.1.

Managing a bioinformatics core facility: course materials

Brooksbank C, Butcher S, Carvajal-López P.

2022

doi:10.6019/tol.corefacilitiesmaterials-t.2022.00001.1.

The European Bioinformatics Institute (EMBL-EBI) in 2021.

Cantelli G, Bateman A, Brooksbank C, Petrov AI, Malik-Sheriff RS, Ide-Smith M, Hermjakob H, Flicek P, Apweiler R, Birney E, McEntyre J.

Nucleic acids research, 2022

doi:10.1093/nar/gkab1127.

Ten simple rules for leveraging virtual interaction to build higher-level learning into bioinformatics short courses.

Bacon W, Holinski A, Pujol M, Wilmott M, Morgan SL, European Molecular Biology Laboratory—European Bioinformatics Institute Training Team.

PLoS computational biology, 2022

doi:10.1371/journal.pcbi.1010220.

Correction: Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries.

Moore B, Carvajal-López P, Abel Chauke P, Cristancho M, Dominguez Del Angel V, Fernandez-Valverde SL, Ghouila A, Gopalasingam P, Guerfali FZ, Matimba A, Morgan SL, Oliveira G, Ras V, Reyes A, De Las Rivas J, Mulder N.

PLoS computational biology, 2022

doi:10.1371/journal.pcbi.1010197.

Introduction to CATH database: Quick tour

Waman V, Silitoe I, Mishra A, Orengo C.

2021

doi:10.6019/tol.cathdb-t.2021.00001.1.

A guide to...: Introducing concepts and resources in bioinformatics

Sarkans U, Madhusoodanan N, Mushtaq A, Petrov A, Griffiths-Jones S, Ontiveros-Palacios N, Nawrocki E, Griss J, Meldal B, Bowler-Barnett E, Paysan-Lafosse T, Armstrong D, Manners E, Hunter F, Cornu H, O’Donovan C, Harrus D, Zaru R, Pearce M, Eduardo Ribas C, Sweeney B, Swan A, Mishra A.

2021

doi:10.6019/tol.guidewebinarseries-t.2021.00001.1.

Case studies to support use of the ISCB Competency Framework for curriculum design and evaluation

Gaeta B, Aron S, Nikolic D, Berkson R, Matimba A, Brooksbank C.

Preprint, 2021

doi:10.5281/zenodo.5810303.

Guidelines for developing and updating short courses and course programs using the ISCB competency framework

Schwartz R, Brooksbank C, Gaeta B, Mulder N, Morgan S, Satagopam V, Ras V, Salifu SP, Tyagi S, Mazandu GK, Aron S, Lloret-Llinares M, Kumuthini J, Brazas M, Gall A, Moore B, Holinski A.

Preprint, 2021

doi:10.5281/zenodo.5418103.

Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine.

Rajewsky N, Almouzni G, Gorski SA, Aerts S, Amit I, Bertero MG, Bock C, Bredenoord AL, Cavalli G, Chiocca S, Clevers H, De Strooper B, Eggert A, Ellenberg J, Fernández XM, Figlerowicz M, Gasser SM, Hubner N, Kjems J, Knoblich JA, Krabbe G, Lichter P, Linnarsson S, Marine JC, Marioni JC, Marti-Renom MA, Netea MG, Nickel D, Nollmann M, Novak HR, Parkinson H, Piccolo S, Pinheiro I, Pombo A, Popp C, Reik W, Roman-Roman S, Rosenstiel P, Schultze JL, Stegle O, Tanay A, Testa G, Thanos D, Theis FJ, Torres-Padilla ME, Valencia A, Vallot C, van Oudenaarden A, Vidal M, Voet T, LifeTime Community Working Groups.

Nature, 2021

doi:10.1038/s41586-021-03287-8.

The European Bioinformatics Institute: empowering cooperation in response to a global health crisis.

Cantelli G, Cochrane G, Brooksbank C, McDonagh E, Flicek P, McEntyre J, Birney E, Apweiler R.

Nucleic acids research, 2021

doi:10.1093/nar/gkaa1077.

Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries.

Moore B, Carvajal-López P, Chauke PA, Cristancho M, Dominguez Del Angel V, Fernandez-Valverde SL, Ghouila A, Gopalasingam P, Guerfali FZ, Matimba A, Morgan SL, Oliveira G, Ras V, Reyes A, De Las Rivas J, Mulder N.

PLoS computational biology, 2021

doi:10.1371/journal.pcbi.1009218.

Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.

Dillon MR, Bolyen E, Adamov A, Belk A, Borsom E, Burcham Z, Debelius JW, Deel H, Emmons A, Estaki M, Herman C, Keefe CR, Morton JT, Oliveira RRM, Sanchez A, Simard A, Vázquez-Baeza Y, Ziemski M, Miwa HE, Kerere TA, Coote C, Bonneau R, Knight R, Oliveira G, Gopalasingam P, Kaehler BD, Cope EK, Metcalf JL, Robeson Ii MS, Bokulich NA, Caporaso JG.

PLoS computational biology, 2021

doi:10.1371/journal.pcbi.1009056.

Wheat genomics and breeding: bridging the gap.

Hussain B, Akpınar BA, Alaux M, Algharib AM, Sehgal D, Ali Z, Appels R, Aradottir GI, Batley J, Bellec A, Bentley AR, Cagirici HB, Cattivelli L, Choulet F, Cockram J, Desiderio F, Devaux P, Dogramaci M, Dorado G, Dreisigacker S, Edwards D, El-Hassouni K, Eversole K, Fahima T, Figueroa M, Gálvez S, Gill KS, Govta L, Gul A, Hensel G, Hernandez P, Herrera LC, Ibrahim A, Kilian B, Korzun V, Krugman T, Li Y, Liu S, Mahmoud AF, Morgounov A, Muslu T, Naseer F, Ordon F, Paux E, Perovic D, Reddy GVP, Reif JC, Reynolds M, Roychowdhury R, Rudd J, Sen TZ, Sukumaran S, Tiwari VK, Ullah N, Unver T, Yazar S, Budak H.

Preprint, 2021

doi:10.31220/agrirxiv.2021.00039.

Human epidermal stem cell differentiation is modulated by specific lipid subspecies.

Vietri Rudan M, Mishra A, Klose C, Eggert US, Watt FM.

Proceedings of the National Academy of Sciences of the United States of America, 2020

doi:10.1073/pnas.2011310117.

LifeTime and improving European healthcare through cell-based interceptive medicine.

Rajewsky N, Almouzni G, Gorski SA, Aerts S, Amit I, Bertero MG, Bock C, Bredenoord AL, Cavalli G, Chiocca S, Clevers H, De Strooper B, Eggert A, Ellenberg J, Fernández XM, Figlerowicz M, Gasser SM, Hubner N, Kjems J, Knoblich JA, Krabbe G, Lichter P, Linnarsson S, Marine JC, Marioni JC, Marti-Renom MA, Netea MG, Nickel D, Nollmann M, Novak HR, Parkinson H, Piccolo S, Pinheiro I, Pombo A, Popp C, Reik W, Roman-Roman S, Rosenstiel P, Schultze JL, Stegle O, Tanay A, Testa G, Thanos D, Theis FJ, Torres-Padilla ME, Valencia A, Vallot C, van Oudenaarden A, Vidal M, Voet T, LifeTime Community Working Groups.

Nature, 2020

doi:10.1038/s41586-020-2715-9.

A framework to assess the quality and impact of bioinformatics training across ELIXIR.

Gurwitz KT, Singh Gaur P, Bellis LJ, Larcombe L, Alloza E, Balint BL, Botzki A, Dimec J, Dominguez Del Angel V, Fernandes PL, Korpelainen E, Krause R, Kuzak M, Le Pera L, Leskošek B, Lindvall JM, Marek D, Martinez PA, Muyldermans T, Nygård S, Palagi PM, Peterson H, Psomopoulos F, Spiwok V, van Gelder CWG, Via A, Vidak M, Wibberg D, Morgan SL, Rustici G.

PLoS computational biology, 2020

doi:10.1371/journal.pcbi.1007976.

Ten simple rules for making training materials FAIR.

Garcia L, Batut B, Burke ML, Kuzak M, Psomopoulos F, Arcila R, Attwood TK, Beard N, Carvalho-Silva D, Dimopoulos AC, Del Angel VD, Dumontier M, Gurwitz KT, Krause R, McQuilton P, Le Pera L, Morgan SL, Rauste P, Via A, Kahlem P, Rustici G, van Gelder CWG, Palagi PM.

PLoS computational biology, 2020

doi:10.1371/journal.pcbi.1007854.

Author Correction: Leveraging European infrastructures to access 1 million human genomes by 2022.

Saunders G, Baudis M, Becker R, Beltran S, Béroud C, Birney E, Brooksbank C, Brunak S, Van den Bulcke M, Drysdale R, Capella-Gutierrez S, Flicek P, Florindi F, Goodhand P, Gut I, Heringa J, Holub P, Hooyberghs J, Juty N, Keane TM, Korbel JO, Lappalainen I, Leskosek B, Matthijs G, Mayrhofer MT, Metspalu A, Navarro A, Newhouse S, Nyrönen T, Page A, Persson B, Palotie A, Parkinson H, Rambla J, Salgado D, Steinfelder E, Swertz MA, Valencia A, Varma S, Blomberg N, Scollen S.

Nature reviews. Genetics, 2019

doi:10.1038/s41576-019-0178-3.

Leveraging European infrastructures to access 1 million human genomes by 2022.

Saunders G, Baudis M, Becker R, Beltran S, Béroud C, Birney E, Brooksbank C, Brunak S, Van den Bulcke M, Drysdale R, Capella-Gutierrez S, Flicek P, Florindi F, Goodhand P, Gut I, Heringa J, Holub P, Hooyberghs J, Juty N, Keane TM, Korbel JO, Lappalainen I, Leskosek B, Matthijs G, Mayrhofer MT, Metspalu A, Navarro A, Newhouse S, Nyrönen T, Page A, Persson B, Palotie A, Parkinson H, Rambla J, Salgado D, Steinfelder E, Swertz MA, Valencia A, Varma S, Blomberg N, Scollen S.

Nature reviews. Genetics, 2019

doi:10.1038/s41576-019-0156-9.

From trainees to trainers to instructors: Sustainably building a national capacity in bioinformatics training.

McGrath A, Champ K, Shang CA, van Dam E, Brooksbank C, Morgan SL.

PLoS computational biology, 2019

doi:10.1371/journal.pcbi.1006923.

Consent insufficient for data release-Response.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science (New York, N.Y.), 2019

doi:10.1126/science.aax7509.

The European Bioinformatics Institute in 2018: tools, infrastructure and training.

Cook CE, Lopez R, Stroe O, Cochrane G, Brooksbank C, Birney E, Apweiler R.

Nucleic acids research, 2019

doi:10.1093/nar/gky1124.

Ten simple rules for delivering live distance training in bioinformatics across the globe using webinars.

Carvalho-Silva D, Garcia L, Morgan SL, Brooksbank C, Dunham I.

PLoS computational biology, 2018

doi:10.1371/journal.pcbi.1006419.

The development and application of bioinformatics core competencies to improve bioinformatics training and education.

Mulder N, Schwartz R, Brazas MD, Brooksbank C, Gaeta B, Morgan SL, Pauley MA, Rosenwald A, Rustici G, Sierk M, Warnow T, Welch L.

PLoS computational biology, 2018

doi:10.1371/journal.pcbi.1005772.

Microarray-Based Quality Assessment as a Supporting Criterion for de novo Transcriptome Assembly Selection.

Carvajal-Lopez P, Von Borstel FD, Torres A, Rustici G, Gutierrez J, Romero-Vivas E.

IEEE/ACM transactions on computational biology and bioinformatics, 2018

doi:10.1109/tcbb.2018.2860997.

EMBL-EBI resources: An introduction

Gopalasingam P.

2018

doi:10.6019/tol.intr-ebi-res-w.2015.00001.1.

10th Anniversary Treasure Hunt

Armstrong D, Burke M, Huerta L, Levchenko M, Mitchell A, Morgan S, Mugumbate G, Mutowo P, Orchard S, Perry E, Pundir S, Richardson L, Tang A.

2017

doi:10.6019/tol.treasure-t.2017.00001.1.

A global perspective on bioinformatics training needs

Brazas MD, Brooksbank C, Jimenez RC, Blackford S, Palagi PM, De Las Rivas J, Ouellette BF, Kumuthini J, Korpelainen E, Lewitter F, van Gelder CW, Mulder N, Corpas M, Schneider MV, Tan TW, Clements D, Davies A, Attwood TK.

Preprint, 2017

doi:10.1101/098996.

Microbiology Managers: Managerial Training in the RItrain Project.

Paterson RRM, Lima N, Brooksbank C, Guarini E, Pasterk M, Lavitrano M, RItrain project consortium.

Trends in microbiology, 2017

doi:10.1016/j.tim.2017.03.002.

Introduction to training with EMBL-EBI

Brooksbank C.

2016

doi:10.6019/tol.train-w.2016.00001.1.

Bioinformatics for the terrified

Brooksbank C, Cowley A.

2016

doi:10.6019/tol.bioinfter-c.2016.00001.1.

Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee).

Welch L, Brooksbank C, Schwartz R, Morgan SL, Gaeta B, Kilpatrick AM, Mietchen D, Moore BL, Mulder N, Pauley M, Pearson W, Radivojac P, Rosenberg N, Rosenwald A, Rustici G, Warnow T.

PLoS computational biology, 2016

doi:10.1371/journal.pcbi.1004943.

Ten Simple Rules for Selecting a Bio-ontology.

Malone J, Stevens R, Jupp S, Hancocks T, Parkinson H, Brooksbank C.

PLoS computational biology, 2016

doi:10.1371/journal.pcbi.1004743.

User experience design

Rowland F, Pundir S, Brooksbank C, Hancocks T.

2015

doi:10.6019/tol.ux-c.2015.00001.1.

GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training.

Attwood TK, Bongcam-Rudloff E, Brazas ME, Corpas M, Gaudet P, Lewitter F, Mulder N, Palagi PM, Schneider MV, van Gelder CW, GOBLET Consortium.

PLoS computational biology, 2015

doi:10.1371/journal.pcbi.1004143.

Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat.

Leach LJ, Belfield EJ, Jiang C, Brown C, Mithani A, Harberd NP.

BMC genomics, 2014

doi:10.1186/1471-2164-15-276.

Microarray-based ultra-high resolution discovery of genomic deletion mutations.

Belfield EJ, Brown C, Gan X, Jiang C, Baban D, Mithani A, Mott R, Ragoussis J, Harberd NP.

BMC genomics, 2014

doi:10.1186/1471-2164-15-224.

Bioinformatics curriculum guidelines: toward a definition of core competencies.

Welch L, Lewitter F, Schwartz R, Brooksbank C, Radivojac P, Gaeta B, Schneider MV.

PLoS computational biology, 2014

doi:10.1371/journal.pcbi.1003496.

The European Bioinformatics Institute's data resources 2014.

Brooksbank C, Bergman MT, Apweiler R, Birney E, Thornton J.

Nucleic acids research, 2013

doi:10.1093/nar/gkt1206.

LifeTrain: towards a European framework for continuing professional development in biomedical sciences

Brooksbank C.

Nature reviews. Drug discovery, 2013

doi:10.1038/nrd4026.

iAnn: an event sharing platform for the life sciences.

Jimenez RC, Albar JP, Bhak J, Blatter MC, Blicher T, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, van Driel MA, Dunn MJ, Fernandes PL, van Gelder CW, Hermjakob H, Ioannidis V, Judge DP, Kahlem P, Korpelainen E, Kraus HJ, Loveland J, Mayer C, McDowall J, Moran F, Mulder N, Nyronen T, Rother K, Salazar GA, Schneider R, Via A, Villaveces JM, Yu P, Schneider MV, Attwood TK, Corpas M.

Bioinformatics (Oxford, England), 2013

doi:10.1093/bioinformatics/btt306.

Bioinformatics meets user-centred design: a perspective.

Pavelin K, Cham JA, de Matos P, Brooksbank C, Cameron G, Steinbeck C.

PLoS computational biology, 2012

doi:10.1371/journal.pcbi.1002554.

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.

Schneider MV, Walter P, Blatter MC, Watson J, Brazas MD, Rother K, Budd A, Via A, van Gelder CW, Jacob J, Fernandes P, Nyrönen TH, De Las Rivas J, Blicher T, Jimenez RC, Loveland J, McDowall J, Jones P, Vaughan BW, Lopez R, Attwood TK, Brooksbank C.

Briefings in bioinformatics, 2011

doi:10.1093/bib/bbr064.

Bioinformatics training: selecting an appropriate learning content management system--an example from the European Bioinformatics Institute.

Wright VA, Vaughan BW, Laurent T, Lopez R, Brooksbank C, Schneider MV.

Briefings in bioinformatics, 2010

doi:10.1093/bib/bbq023.

Bioinformatics training: a review of challenges, actions and support requirements.

Schneider MV, Watson J, Attwood T, Rother K, Budd A, McDowall J, Via A, Fernandes P, Nyronen T, Blicher T, Jones P, Blatter MC, De Las Rivas J, Judge DP, van der Gool W, Brooksbank C.

Briefings in bioinformatics, 2010

doi:10.1093/bib/bbq021.

The European Bioinformatics Institute's data resources.

Brooksbank C, Cameron G, Thornton J.

Nucleic acids research, 2009

doi:10.1093/nar/gkp986.

Data standards: a call to action.

Brooksbank C, Quackenbush J.

Omics : a journal of integrative biology, 2006

doi:10.1089/omi.2006.10.94.

A Quick Guide to the EMBL Bank Nucleotide Sequence Database

Cochrane G, Brooksbank C.

2005

doi:.

It's all GO for plant scientists.

Clark JI, Brooksbank C, Lomax J.

Plant physiology, 2005

doi:10.1104/pp.104.058529.

The European Bioinformatics Institute's data resources: towards systems biology.

Brooksbank C, Cameron G, Thornton J.

Nucleic acids research, 2005

doi:10.1093/nar/gki026.

ISMB/ECCB 2004

Bioinformatics (Oxford, England), 2004

doi:10.1093/bioinformatics/bth950.

The Gene Ontology Annotation (GOA) Project--Application of GO in SWISS-PROT, TrEMBL and InterPro.

Camon E, Barrell D, Brooksbank C, Magrane M, Apweiler R.

Comparative and functional genomics, 2003

doi:10.1002/cfg.235.

The European Bioinformatics Institute's data resources.

Brooksbank C, Camon E, Harris MA, Magrane M, Martin MJ, Mulder N, O'Donovan C, Parkinson H, Tuli MA, Apweiler R, Birney E, Brazma A, Henrick K, Lopez R, Stoesser G, Stoehr P, Cameron G.

Nucleic acids research, 2003

doi:10.1093/nar/gkg066.

P53 regulation: Hitting the G spot

Brooksbank C.

Nature reviews. Cancer, 2002

doi:doi:10.1038/nrc828.

Tumour–stroma interactions:: The causes of crime

Brooksbank C.

Nature reviews. Cancer, 2002

doi:doi:10.1038/nrc829.

Web Watch: Realistic goals

Brooksbank C.

Nature reviews. Cancer, 2002

doi:doi:10.1038/nrc815.

Oncogenes: Dancing the two-step

Brooksbank C.

Nature reviews. Cancer, 2002

doi:10.1038/nrc753.

Web Watch: Buried treasure

Brooksbank C.

Nature reviews. Cancer, 2002

doi:doi:10.1038/nrc766.

Metastasis: Bad company

Brooksbank C.

Nature reviews. Cancer, 2002

doi:10.1038/nrc750.

Top scorer.

Brooksbank C.

Nature reviews. Cancer, 2002

doi:10.1038/nrc730.

Drifting downstream.

Brooksbank C.

Nature reviews. Cancer, 2002

doi:10.1038/nrc733.

One size fits all.

Brooksbank C.

Nature reviews. Cancer, 2002

doi:10.1038/nrc736.

The underlying principles of scientific publication.

Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ, Stewart JE, Taylor R, Brazma A, Quackenbush J, Microarray Gene Expression Data.

Bioinformatics (Oxford, England), 2002

doi:10.1093/bioinformatics/18.11.1409.

Standards for microarray data.

Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ, Stewart JE, Taylor R, Brazma A, Quackenbush J, Microarray Gene Expression Data (MGED) Society.

Science (New York, N.Y.), 2002

doi:10.1126/science.298.5593.539b.

RAS, the magician.

Brooksbank C.

Nature reviews. Cancer, 2002

doi:10.1038/nrc794.

Unable to resist.

Brooksbank C.

Nature reviews. Cancer, 2002

doi:10.1038/nrc785.

Cell division: Battle at the p15 promoter

Brooksbank C.

Nature reviews. Molecular cell biology, 2001

doi:10.1038/35067034.

Web Watch: What's in it for me?

Brooksbank C.

Nature reviews. Molecular cell biology, 2001

doi:doi:10.1038/35056549.

Cell division: Don't shoot now

Brooksbank C.

Nature reviews. Molecular cell biology, 2001

doi:10.1038/35056506.

Take steroids to move faster

Brooksbank C.

Nature reviews. Molecular cell biology, 2001

doi:doi:10.1038/35052034.

Web Watch: Smart by name

Brooksbank C.

Nature reviews. Molecular cell biology, 2001

doi:10.1038/35048048.

Web Watch: Chopping and changing

Brooksbank C.

Nature reviews. Cancer, 2001

doi:10.1038/35106056.

Breast cancer: Team effort

Brooksbank C.

Nature reviews. Cancer, 2001

doi:10.1038/35106027.

Drug resistance: ABL to resist

Brooksbank C.

Nature reviews. Cancer, 2001

doi:10.1038/35106000.

Tumour suppressors: One-hit wonders?

Brooksbank C.

Nature reviews. Cancer, 2001

doi:10.1038/35106021.

Oncogenes: Breaking and entering

Brooksbank C.

Nature reviews. Cancer, 2001

doi:doi:10.1038/35101000.

Autocrine loops: The complete guide to self sufficiency

Brooksbank C.

Nature reviews. Cancer, 2001

doi:doi:10.1038/35101047.

Apoptosis: ASPP bites

Brooksbank C.

Nature reviews. Cancer, 2001

doi:doi:10.1038/35101044.

Therapeutic targets: Withdrawal symptoms

Brooksbank C.

Nature reviews. Cancer, 2001

doi:doi:10.1038/35094028.

Oncogenes: Dr Jekyll and Mr Hyde

Brooksbank C.

Nature reviews. Cancer, 2001

doi:doi:10.1038/35094025.

Cell division: Dodging death at division?

Brooksbank C.

Nature reviews. Molecular cell biology, 2001

doi:10.1038/35048000.

Protein-protein interactions: Phosphothreonine lego.

Brooksbank C.

Nature reviews. Molecular cell biology, 2001

doi:10.1038/35048033.

Protein degradation: Parkin finds a partner and a victim.

Brooksbank C.

Nature reviews. Molecular cell biology, 2001

doi:10.1038/35048029.

Phosphorylation. The key to staying faithful.

Brooksbank C.

Nature reviews. Molecular cell biology, 2001

doi:10.1038/35056503.

Endocytosis. Tent pegs for clathrin.

Brooksbank C.

Nature reviews. Molecular cell biology, 2001

doi:10.1038/35056559.

Protein trafficking. Made for export.

Brooksbank C.

Nature reviews. Molecular cell biology, 2001

doi:10.1038/35052037.

Eating well.

Brooksbank C.

Nature reviews. Molecular cell biology, 2001

doi:10.1038/35052029.

Protein metabolism: Gates of destruction

Brooksbank C.

Nature reviews. Molecular cell biology, 2000

doi:10.1038/35043026.

Development: Divide and rule

Brooksbank C.

Nature reviews. Molecular cell biology, 2000

doi:10.1038/35043013.

Cell adhesion: How to lead a double life

Brooksbank C.

Nature reviews. Molecular cell biology, 2000

doi:10.1038/35043005.

Development and cancer: Tampering with the cell cycle's brakes

Brooksbank C.

Nature reviews. Molecular cell biology, 2000

doi:10.1038/35040034.

Transcription: A molecular Swiss-army knife

Brooksbank C.

Nature reviews. Molecular cell biology, 2000

doi:10.1038/35040032.

Web Watch: From signal to sequence

Brooksbank C.

Nature reviews. Molecular cell biology, 2000

doi:10.1038/35040027.

Cell division: Foreman in the histone factory

Brooksbank C.

Nature reviews. Molecular cell biology, 2000

doi:10.1038/35040000.

Web watch: Untangling inositol

Brooksbank C.

Nature reviews. Molecular cell biology, 2000

doi:10.1038/35036023.

Web Watch: Networking with proteins

Brooksbank C.

Nature reviews. Molecular cell biology, 2000

doi:10.1038/35036007.

Pocket the difference.

Brooksbank C.

Nature reviews. Molecular cell biology, 2000

doi:10.1038/35036032.

A cell cycle controller rewrites its CV.

Brooksbank C.

Nature reviews. Molecular cell biology, 2000

doi:10.1038/35036002.

Rapid update

Brooksbank C.

Molecular medicine today, 1999

doi:10.1016/s1357-4310(99)01613-5.

Rapid update.

Brooksbank C.

Molecular medicine today, 1999

doi:10.1016/s1357-4310(99)01582-8.

Targeted transgenics from the creators of Dolly.

Brooksbank C.

Molecular medicine today, 1999

doi:10.1016/s1357-4310(99)01551-8.

Rapid update

Brooksbank C.

Molecular medicine today, 1999

doi:10.1016/s1357-4310(99)01525-7.

Rapid update

Brooksbank C.

Molecular medicine today, 1999

doi:10.1016/s1357-4310(99)01504-x.

Rapid update

Brooksbank C.

Molecular medicine today, 1999

doi:10.1016/s1357-4310(99)01511-7.

Rapid update

Brooksbank C.

Molecular medicine today, 1999

doi:10.1016/s1357-4310(99)01488-4.

Disease models: relevance is everything.

Brooksbank C.

Molecular medicine today, 1999

doi:10.1016/s1357-4310(99)01495-1.

Genes and environment: informing future public health decisions.

Brooksbank C.

Molecular medicine today, 1999

doi:10.1016/s1357-4310(99)01510-5.

Securing public access to genomic information: the race is on.

Brooksbank C.

Molecular medicine today, 1999

doi:10.1016/s1357-4310(99)01487-2.

How much molecular medicine do medical students need to learn?

Brooksbank C.

Molecular medicine today, 1999

doi:10.1016/s1357-4310(99)01446-x.

Parasite genomes: drugs and vaccines up for grabs.

Brooksbank C.

Molecular medicine today, 1999

doi:10.1016/s1357-4310(98)01409-9.

Hope, not hype, for the future of stem-cell-based therapies.

Brooksbank C.

Molecular medicine today, 1999

doi:10.1016/s1357-4310(98)01416-6.

1998: year of the mouse?

Brooksbank C.

Molecular medicine today, 1998

doi:10.1016/s1357-4310(97)80530-8.

Divide and conquer: understanding the natural history of cancer. XVth Meeting of the European Association for Cancer Research: five natural histories of human cancer. Stockholm, Sweden. 15-19 August 1998.

Brooksbank C.

Molecular medicine today, 1998

doi:10.1016/s1357-4310(98)01357-4.

A taste of the Zeitgeist. 2nd Congress of Molecular Medicine (CMM '98). Berlin, Germany, 6-9 May 1998.

Brooksbank C.

Molecular medicine today, 1998

doi:10.1016/s1357-4310(98)01283-0.

Molecular medicine through the kaleidoscope. The 30th Miami Winter Symposium: Molecular Biology in the Conquest of Disease. Miami, Fl, USA, 7-11 February 1998.

Brooksbank C.

Molecular medicine today, 1998

doi:10.1016/s1357-4310(98)01241-6.

The new cardiology. The American College of Cardiology 47th Annual Scientific Session. Atlanta, GA, USA, 29 March-1 April 1998.

Brooksbank C.

Molecular medicine today, 1998

doi:10.1016/s1357-4310(98)01256-8.