IHECRE00004683.6 LIVE JSON  


Type Single donor
Status Partial
Project ENCODE
Description Reference epigenome for human transverse colon (51 year old female)
Previous versions IHECRE00004683.5   IHECRE00004683.4   IHECRE00004683.3   IHECRE00004683.2   IHECRE00004683.1  

Metadata


Disease ontology curie ncim:C115222
Biomaterial type Primary Tissue
Donor id ENCDO271OUW
Disease ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Donor life stage adult
Donor ethnicity NA
Donor sex Female
Donor age unit year
Tissue type transverse colon
Taxon id 9606
Species Homo sapiens
Disease NA
Sample ontology uri http://purl.obolibrary.org/obo/UBERON_0001157
Donor age 51
Donor health status ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Collection method unknown
Donor health status ontology curie ncim:C115222
Treatment NA
Sample ontology curie uberon:0001157
Tissue depot transverse colon
Donor health status NA
Biomaterial provider Kristin Ardlie, Broad Institute Genomics Platform

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
ChIP-Seq Histone H3K27me3 ENCODE ENCSR604QMH None https://www.encodeproject.org/experiments/ENCSR604QMH
ChIP-Seq Histone H3K36me3 ENCODE ENCSR488YXS None https://www.encodeproject.org/experiments/ENCSR488YXS
ChIP-Seq Histone H3K4me1 ENCODE ENCSR500QVK None https://www.encodeproject.org/experiments/ENCSR500QVK
ChIP-Seq Histone H3K4me3 ENCODE ENCSR315EZG None https://www.encodeproject.org/experiments/ENCSR315EZG
ChIP-Seq Histone H3K27ac ENCODE ENCSR792VLP None https://www.encodeproject.org/experiments/ENCSR792VLP
ChIP-Seq Transcription Factor ENCODE ENCSR974HQI None https://www.encodeproject.org/experiments/ENCSR974HQI
ChIP-Seq Transcription Factor ENCODE ENCSR170NMC None https://www.encodeproject.org/experiments/ENCSR170NMC
RNA-Seq total-RNA-Seq ENCODE ENCSR403SZN None https://www.encodeproject.org/experiments/ENCSR403SZN
DNase-Hypersensitivity Chromatin Accessibility ENCODE ENCSR760QZM None https://www.encodeproject.org/experiments/ENCSR760QZM
ATAC-seq Chromatin Accessibility ENCODE ENCSR386HAZ None https://www.encodeproject.org/experiments/ENCSR386HAZ
ChIP-Seq Transcription Factor ENCODE ENCSR449SEF None https://www.encodeproject.org/experiments/ENCSR449SEF
ChIP-Seq ChIP-Seq Input ENCODE ENCSR602GPF None https://www.encodeproject.org/experiments/ENCSR602GPF
ChIP-Seq ChIP-Seq Input ENCODE ENCSR384KIB None https://www.encodeproject.org/experiments/ENCSR384KIB
ChIP-Seq ChIP-Seq Input ENCODE ENCSR457NQR None https://www.encodeproject.org/experiments/ENCSR457NQR