IHECRE00004683.1 PREVIOUS JSON  


Type Composite
Status Partial
Project ENCODE
Description Reference epigenome for human transverse colon (51 year old female)
Live version IHECRE00004683.6

Metadata


Biomaterial type Primary Tissue
Disease ontology uri http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115935&ns=NCI_Thesaurus
Donor life stage adult
Donor ethnicity NA
Donor sex Female
Tissue type transverse colon
Donor age unit year
Taxon id 9606
Species Homo sapiens
Sample ontology uri http://purl.obolibrary.org/obo/UBERON:0001157
Disease Healthy
Donor age NA
Collection method unknown
Tissue depot Kristin Ardlie, Broad Institute Genomics Platform
Ddonor health status ontology uri http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115935&ns=NCI_Thesaurus
Donor health status Healthy
Biomaterial provider Kristin Ardlie, Broad Institute Genomics Platform

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
ChIP-Seq Histone H3K27me3 ENCODE ENCSR604QMH None https://www.encodeproject.org/experiments/ENCSR604QMH
ChIP-Seq Histone H3K36me3 ENCODE ENCSR488YXS None https://www.encodeproject.org/experiments/ENCSR488YXS
ChIP-Seq Histone H3K4me1 ENCODE ENCSR500QVK None https://www.encodeproject.org/experiments/ENCSR500QVK
ChIP-Seq Histone H3K4me3 ENCODE ENCSR315EZG None https://www.encodeproject.org/experiments/ENCSR315EZG
ChIP-Seq Histone H3K27ac ENCODE ENCSR792VLP None https://www.encodeproject.org/experiments/ENCSR792VLP
ChIP-Seq Histone H3K9me3 ENCODE ENCSR235REN None https://www.encodeproject.org/experiments/ENCSR235REN
ChIP-Seq ChIP-Seq Input: Transcription factor POLR2A ENCODE ENCSR974HQI None https://www.encodeproject.org/experiments/ENCSR974HQI
ChIP-Seq ChIP-Seq Input: Transcription factor POLR2AphosphoS5 ENCODE ENCSR170NMC None https://www.encodeproject.org/experiments/ENCSR170NMC
RNA-Seq RNA-Seq ENCODE ENCSR403SZN None https://www.encodeproject.org/experiments/ENCSR403SZN
DNase-Hypersensitivity Chromatin Accessibility ENCODE ENCSR760QZM None https://www.encodeproject.org/experiments/ENCSR760QZM
ATAC-seq Other ENCODE ENCSR386HAZ None https://www.encodeproject.org/experiments/ENCSR386HAZ
RNA-Seq RNA-Seq ENCODE ENCSR183YQY None https://www.encodeproject.org/experiments/ENCSR183YQY
ChIP-Seq ChIP-Seq Input: Transcription factor CTCF ENCODE ENCSR449SEF None https://www.encodeproject.org/experiments/ENCSR449SEF
ChIP-Seq ChIP-Seq Input ENCODE ENCSR602GPF None https://www.encodeproject.org/experiments/ENCSR602GPF
ChIP-Seq ChIP-Seq Input ENCODE ENCSR384KIB None https://www.encodeproject.org/experiments/ENCSR384KIB
ChIP-Seq ChIP-Seq Input ENCODE ENCSR457NQR None https://www.encodeproject.org/experiments/ENCSR457NQR