Ligand clusters for UniProt code P02554

Ligand clusters for P02554: Tubulin beta chain from Sus scrofa

		Top 6 (of 10) ligand clusters Cluster 1. 22 ligand types 84 ligands Cluster 2. 14 ligand types 124 ligands Cluster 3. 3 ligand types 22 ligands Cluster 4. 2 ligand types 19 ligands Cluster 5. 2 ligand types 5 ligands Cluster 6. 1 ligand type 29 ligands
Representative protein: 5kmgB

Structures

PDB		Schematic diagram
5kmgB
3j7iB
3j6hB
5mm4B
5mm7B
		more ...

Cluster 1 contains 22 ligand types (of which only 20 are listed. Click for all)

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: LOC × 1 colchicine N-[(7s)-1,2,3,10-Tetramethoxy-9-Oxo-6,7-Dihydro-5h- Benzo[d]heptalen-7-Yl]ethanamide PDB code: 5xiw(B).
		2. Ligand: GTP × 63 Guanosine-5'-Triphosphate PDB codes: 1tub(B), 2hxf(B), 2hxh(B), 3j6f(B), 3j6g(B), 3j6h(B), 3j6p(B), 3j7i(B), 3jak(F), 3jal(F), 3jar(F), 3jas(F), 3jat(F), 3jaw(B), 4abo(A), 4zhq(B), 4zi7(B), 4zol(B), 5bmv(B), 5fnv(B), 5jcb(B), 5jqg(B), 5kmg(B), 5mm4(B), 5mm7(B), 5ogc(B), 5syc(B), 5sye(B), 5syg(B), 5xiw(B), 5xke(B), 5xp3(B), 5xxt(B), 5xxv(B), 5xxw(B), 5xxx(B), 6b0c(B), 6b0i(B), 6bjc(B), 6cvj(B), 6cvn(A), 6dpu(B), 6dpv(B), 6dpw(B), 6evx(F), 6evy(F), 6ew0(F), 6ls4(B), 6mlq(B), 6mlr(B), 6mze(B), 6mzf(B), 6mzg(B), 6nng(B), 6o2q(B), 6o2r(B), 6rza(B), 6rzb(B), 6ta4(B), 6vpo(B), 6vpp(B), 6y4m(B), 6y4n(B).
		3. Ligand: 88U × 1 N-(4-Methoxyphenyl)-N,2-Dimethyl-Quinazolin-4-Amine PDB code: 5xkf(B).
		4. Ligand: 890 × 1 4-[(3-Azanyl-4-Methoxy-Phenyl)-Methyl-Amino]chromen-2- One PDB code: 5xkg(B).
		5. Ligand: 89C × 1 4-[(4-Methoxy-3-Oxidanyl-Phenyl)-Methyl-Amino]chromen- 2-One PDB code: 5xkh(B).
		6. Ligand: 8WU × 1 (E)-1-(5-Methoxy-2,2-Dimethyl-Chromen-8-Yl)-3-(4- Methoxy-3-Oxidanyl-Phenyl)prop-2-En-1-One PDB code: 5yl2(B).
		7. Ligand: 8X0 × 1 (E)-1-(5-Methoxy-2,2-Dimethyl-Chromen-8-Yl)-3-(4- Methoxyphenyl)prop-2-En-1-One PDB code: 5ylj(B).
		8. Ligand: DJ9 × 1 2-(1h-Indol-6-Yl)-4-(3,4,5-Trimethoxyphenyl)-1h- Imidazo[4,5-C]pyridine PDB code: 6nng(B).
		9. Ligand: E3Y × 1 2-Chloro-4-(6-Methoxy-3,4-Dihydroquinolin-1(2h)-Yl) pyrido[2,3-D]pyrimidine PDB code: 6br1(B).
		10. Ligand: E44 × 1 2-Chloro-4-(6-Methoxy-3,4-Dihydroquinolin-1(2h)-Yl) pyrido[3,2-D]pyrimidine PDB code: 6brf(B).
		11. Ligand: E9Y × 1 1-(3,6-Dimethyl[1,2]oxazolo[5,4-D]pyrimidin-4-Yl)-6- Methoxy-1,2,3,4-Tetrahydroquinoline PDB code: 6bs2(B).
		12. Ligand: G2P × 1 Phosphomethylphosphonic acid guanylate ester PDB code: 6ta3(B).
		13. Ligand: G8K × 1 [2-(1h-Indol-4-Yl)-1h-Imidazol-4-Yl](3,4,5- Trimethoxyphenyl)methanone PDB code: 6o5m(B).
		14. Ligand: G9K × 1 [2-(1h-Indol-3-Yl)-1h-Imidazol-4-Yl](8-Methoxy-1,4- Benzodioxin-6-Yl)methanone PDB code: 6d88(B).
		15. Ligand: GK9 × 1 1-(2-Chlorofuro[3,2-D]pyrimidin-4-Yl)-6-Methoxy-1,2,3, 4-Tetrahydroquinoline PDB code: 6bry(B).
		16. Ligand: KUM × 1 [2-(1h-Indol-3-Yl)-1h-Imidazol-5-Yl](3,4,5- Trimethoxyphenyl)methanone PDB code: 6o61(B).
		17. Ligand: LON × 1 (7s)-1,2,3,10-Tetramethoxy-7-(Methylamino)-6,7-Dihydro- 5h-Benzo[a]heptalen-9-One PDB code: 5xke(B).
		18. Ligand: NV4 × 1 (5r,5ar,8as,9r)-9-[(4h-1,2,4-Triazol-3-Yl)sulfanyl]-5- (3,4,5-Trimethoxyphenyl)-5,8,8a,9- Tetrahydro-2h- Furo[3',4':6,7]naphtho[2,3-D][1,3]dioxol-6(5ah)-One PDB code: 5jcb(B).
		19. Ligand: O91 × 1 [2-(4-Methylphenyl)-1h-Imidazol-4-Yl](3,4,5- Trimethoxyphenyl)methanone PDB code: 6pc4(B).
		20. Ligand: QW9 × 1 [2-(4-Methyl-1h-Indol-3-Yl)-1h-Imidazol-5-Yl](3,4,5- Trimethoxyphenyl)methanone PDB code: 6o5n(B).
+ more. Press for full list

Cluster 2 contains 14 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Mg		1. Metal: _MG × 24 PDB codes: 3j6h(B), 3j7i(B), 4zi7(B), 4zol(B), 5fnv(B), 5jcb(B), 5jqg(B), 5xiw(B), 5xke(B), 5xkf(B), 5xkg(B), 5xkh(B), 5xp3(B), 5yl2(B), 5ylj(B), 5yls(B), 6br1(B), 6brf(B), 6bry(B), 6bs2(B), 6d88(B), 6evw(B), 6o5n(B), 6o61(B).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 6ls4(B).
		3. Ligand: VLB × 1 vinblastine (2alpha,2'Beta,3beta,4alpha,5beta)-Vincaleukoblastine PDB code: 5bmv(B).
		4. Ligand: GDP × 73 Guanosine-5'-Diphosphate PDB codes: 1ffx(B), 1ia0(B), 1tub(B), 2hxf(B), 2hxh(B), 3j6f(B), 3j6g(B), 3j6p(B), 3jar(F), 3jas(F), 4zhq(B), 4zi7(B), 4zol(B), 5bmv(B), 5fnv(B), 5jcb(B), 5jqg(B), 5kmg(B), 5mm4(B), 5mm7(B), 5oam(B), 5ocu(B), 5ogc(B), 5syc(B), 5sye(B), 5syf(B), 5syg(B), 5xiw(B), 5xke(B), 5xkf(B), 5xkg(B), 5xkh(B), 5xp3(B), 5xxt(B), 5xxv(B), 5xxw(B), 5yl2(B), 5ylj(B), 5yls(B), 6b0c(B), 6b0i(B), 6b0l(B), 6br1(B), 6brf(B), 6bry(B), 6bs2(B), 6cvj(B), 6cvn(A), 6d88(B), 6dpv(B), 6evx(F), 6evz(F), 6ew0(F), 6ls4(B), 6mlq(B), 6mlr(B), 6mze(B), 6mzf(B), 6mzg(B), 6nng(B), 6o2q(B), 6o2r(B), 6o5m(B), 6o5n(B), 6o61(B), 6pc4(B), 6rza(B), 6rzb(B), 6vpo(B), 6vpp(B), 6y4m(B), 6y4n(B), 6zpi(B).
		5. Ligand: G2P × 11 Phosphomethylphosphonic acid guanylate ester PDB codes: 3j6e(B), 3j6h(B), 3jal(F), 3jat(F), 5xxx(B), 6bjc(B), 6dpu(B), 6evw(B), 6ta3(B), 6ta4(B), 6tiw(B).
		6. Ligand: GSP × 5 5'-Guanosine-Diphosphate-Monothiophosphate PDB codes: 3jak(F), 3jaw(B), 4abo(A), 6dpw(B), 6evy(F).
		7. Ligand: O9B × 2 (2~{r})-1-Methylpiperidine-2-Carboxylic acid PDB codes: 6y4m(B), 6y4n(B).
		8. Ligand: 4Q5 × 1 N-Methyl-L-Valyl-N-[(3r,4s,5s)-1-{(2s)-2-[(1r,2r)-3- {[(1s,2r)-1-Hydroxy-1-Phenylpropan-2- Yl]amino}-1- Methoxy-2-Methyl-3-Oxopropyl]pyrrolidin-1-Yl}-3- Methoxy-5-Methyl-1-Oxoheptan-4-Yl]- N-Methyl-L- Valinamide PDB code: 4zhq(B).
		9. Ligand: 4SL × 1 N,Beta,Beta-Trimethyl-L-Phenylalanyl-N-[(3s,4z)-5- Carboxy-2-Methylhex-4-En-3-Yl]-N,3-Dimethyl-L- Valinamide PDB code: 4zi7(B).
		10. Ligand: 55Q × 1 (2r,4r)-4-{[(2-{(1r,3r)-1-(Acetyloxy)-4-Methyl-3- [Methyl(n-{[(2s)-1-Methylpiperidin-2- Yl]carbonyl}-D- Isoleucyl)amino]pentyl}-1,3-Thiazol-4-Yl) carbonyl]amino}-2-Methyl-5- Phenylpentanoic acid PDB code: 4zol(B).
		11. Ligand: GTP × 1 Guanosine-5'-Triphosphate PDB code: 3j7i(B).
		12. Ligand: O9H-OH5 × 1 O9H=[(1~{r},3~{r})-1-Acetyloxy-1-[4-Methanoyl-5-(2- Phenylmethoxyethyl)-2,3-Dihydro-1,3-Thiazol-2-Yl]- 4- Methyl-Pentan-3-Yl]-Methyl-Azanium, OH5=(2~{s},4~{r})-4-Azanyl-2-Methyl-5-Phenyl-Pentanoic acid. PDB code: 6y4m(B).
		13. Ligand: O9K-O9N × 1 O9K=[(1~{r},3~{r})-1-(4-Methanoyl-1,3-Thiazol-2-Yl)-4- Methyl-3-(Methylamino)pentyl] ethanoate, O9N=Methyl (2~{s},4~{s})-2,4-Bis(azanyl)-5-Phenyl- Pentanoate. PDB code: 6y4n(B).
		14. Ligand: PO4 × 1 Phosphate ion PDB code: 6evx(F).

Cluster 3 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: TA1 × 19 paclitaxel Taxol PDB codes: 2hxf(B), 2hxh(B), 3j6g(B), 3j6p(B), 5mm4(B), 5mm7(B), 5oam(B), 5ocu(B), 5ogc(B), 5sye(B), 5syf(B), 6b0i(B), 6b0l(B), 6ew0(F), 6mlq(B), 6mlr(B), 6rza(B), 6rzb(B), 6zpi(B).
		2. Ligand: TXL × 2 docetaxel Taxotere PDB codes: 1ia0(B), 1tub(B).
		3. Ligand: ZPN × 1 (2z,4e)-N-[(S)-[(1s,2e,5s,8e,10z,17s)-3,11-Dimethyl-19- Methylidene-7,13-Dioxo-6,21- Dioxabicyclo[15.3.1]henicosa-2,8,10-Trien-5- Yl](hydroxy)methyl]hexa-2,4-Dienamide PDB code: 5syg(B).

Cluster 4 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: MES × 16 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 4zhq(B), 4zi7(B), 4zol(B), 5bmv(B), 5fnv(B), 5jqg(B), 6br1(B), 6brf(B), 6bry(B), 6bs2(B), 6d88(B), 6nng(B), 6o5m(B), 6o5n(B), 6o61(B), 6pc4(B).
		2. Ligand: POU × 3 Peloruside a PDB codes: 5kmg(B), 5syc(B), 5sye(B).

Cluster 5 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 4zhq(B), 4zi7(B), 4zol(B), 5bmv(B).
		2. Ligand: PGE × 1 Triethylene glycol PDB code: 6y4m(B).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: MES × 29 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 4zhq(B), 4zi7(B), 4zol(B), 5bmv(B), 5fnv(B), 5jcb(B), 5jqg(B), 5xiw(B), 5xke(B), 5xkf(B), 5xkg(B), 5xkh(B), 5xp3(B), 5yl2(B), 5ylj(B), 5yls(B), 6br1(B), 6brf(B), 6bry(B), 6bs2(B), 6d88(B), 6ls4(B), 6nng(B), 6o5m(B), 6o5n(B), 6o61(B), 6pc4(B), 6y4m(B), 6y4n(B).