Ligand clusters for UniProt code P00431

Ligand clusters for P00431: Cytochrome c peroxidase, mitochondrial from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

		Top 6 (of 11) ligand clusters Cluster 1. 85 ligand types 301 ligands Cluster 2. 5 ligand types 7 ligands Cluster 3. 4 ligand types 5 ligands Cluster 4. 3 ligand types 3 ligands Cluster 5. 2 ligand types 2 ligands Cluster 6. 2 ligand types 3 ligands
Representative protein: 1cyfA

Structures

PDB		Schematic diagram
1cyfA
1cceA
1aeeA
1cmqA
4ccxA
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Cluster 1 contains 85 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
__K		1. Metal: __K × 4 PDB codes: 1cpe(A), 1cpg(A), 2as3(A), 2as4(A).
		2. Ligand: 4AP × 1 dalfampridine 4-Aminopyridine PDB code: 1aeg(A).
		3. Ligand: ASC × 1 ascorbic acid Ascorbic acid PDB code: 2x08(A).
		4. Ligand: IPH × 1 phenol Phenol PDB code: 2as3(A).
		5. Ligand: ISZ × 1 isoniazid 4-(Diazenylcarbonyl)pyridine PDB code: 2v2e(A).
		6. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 1cpf(A).
_Mn		7. Metal: _MN × 1 PDB code: 5d6m(A).
__F		8. Metal: __F × 1 PDB code: 4jb4(A).
		9. Ligand: ZNH × 4 Protoporphyrin IX containing zn PDB codes: 2b0z(A), 2b10(A), 2b11(A), 2b12(A).
		10. Ligand: ZEM × 1 20-Oxo-Protoporphyrin IX containing zn(ii) PDB code: 1ml2(A).
		11. Ligand: PP9 × 1 Protoporphyrin IX PDB code: 1z53(A).
		12. Ligand: HEC × 1 Heme c PDB code: 2gb8(A).
		13. Ligand: BZI × 2 Benzimidazole PDB codes: 1kxm(A), 1ryc(A).
		14. Ligand: IDM × 1 Indoline PDB code: 1aek(A).
		15. Ligand: MPI × 1 Imidazo[1,2-A]pyridine PDB code: 1aem(A).
		16. Ligand: ABN × 1 Benzylamine PDB code: 2eus(A).
		17. Ligand: BVF × 1 4-Methylpyridin-2-Amine PDB code: 2eut(A).
		18. Ligand: LG4 × 1 5-Methylpyridin-2-Amine PDB code: 2eup(A).
		19. Ligand: PY7 × 1 Pyridin-4-Ylmethanol PDB code: 2eur(A).
		20. Ligand: 3AP × 1 3-Aminopyridine PDB code: 1aef(A).
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Cluster 2 contains 5 ligand types

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Ligand		Description
		1. Ligand: JZ3 × 2 guaiacol Guaiacol PDB codes: 4a6z(A), 4a78(A).
		2. Ligand: IPH × 1 phenol Phenol PDB code: 4a71(A).
		3. Ligand: 3FA × 1 3-Fluorobenzene-1,2-Diol PDB code: 2as4(A).
		4. Ligand: BZI × 2 Benzimidazole PDB codes: 4xv5(A), 4xva(A).
		5. Ligand: 25T × 1 2-Amino-5-Methylthiazole PDB code: 4xv4(A).

Cluster 3 contains 4 ligand types

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Ligand		Description
		1. Ligand: IPH × 1 phenol Phenol PDB code: 4a71(A).
		2. Ligand: JZ3 × 1 guaiacol Guaiacol PDB code: 4a6z(A).
		3. Ligand: PO4 × 2 Phosphate ion PDB codes: 2rbv(X), 2rbw(X).
		4. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 2rbt(X).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 2xj5(A).
		2. Ligand: MRD × 1 (4r)-2-Methylpentane-2,4-Diol PDB code: 2xil(A).
		3. Ligand: PO4 × 1 Phosphate ion PDB code: 2rbw(X).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 2xj5(A).
		2. Ligand: MRD × 1 (4r)-2-Methylpentane-2,4-Diol PDB code: 2xil(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: MPD × 2 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 2xil(A), 2xj5(A).
		2. Ligand: PO4 × 1 Phosphate ion PDB code: 2rc0(X).