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List of PDB entries containing ligand ADP-BEF

Ligand: ADP-BEF

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Name: ADP=Adenosine-5'-Diphosphate, BEF=Beryllium trifluoride ion,

Links: ADP BEF

The following 77 PDB entries contain the ligand ADP-BEF. The count column shows the number of instances of the molecule in the structure.

PDB id Count Name Method Date

1br4 Smooth muscle myosin motor domain-essential light chain complex with mgadp.Bef3 bound at the active site X-ray(3.62Å) 09-Sep-98

1mmd Truncated head of myosin from dictyostelium discoideum complexed with mgadp-bef3 X-ray(2Å) 17-Aug-96

1w7j Crystal structure of myosin v motor with essential light chain + adp- befx - near rigor X-ray(2Å) 22-Feb-05

1w9i Myosin ii dictyostelium discoideum motor domain s456y bound with mgadp-befx X-ray(1.75Å) 16-Mar-06

1w9k Dictyostelium discoideum myosin ii motor domain s456e with bound mgadp-befx X-ray(2.05Å) 16-Mar-06

2vas Myosin vi (md-insert2-cam, delta-insert1) post-rigor state X-ray(2.4Å) 11-Dec-07

2vb6 Myosin vi (md-insert2-cam, delta insert1) post-rigor state (crystal form 2) X-ray(2.3Å) 11-Dec-07

3din Crystal structure of the protein-translocation complex formed by the secy channel and the seca atpase X-ray(4.5Å) 07-Oct-08

3glf Crystal structure of the ecoli clamp loader bound to primer-template DNA X-ray(3.39Å) 26-May-09

3glg Crystal structure of a mutant (gammat157a) e. Coli clamp loader bound to primer-template DNA X-ray(3.25Å) 26-May-09

3gli Crystal structure of the e. Coli clamp loader bound to primer-template DNA and psi peptide X-ray(3.5Å) 26-May-09

3i61 Structure of mss116p bound to ssrna and adp-beryllium fluoride X-ray(2.1Å) 08-Sep-09

3o8d Visualizing atp-dependent RNA translocation by the ns3 helicase from hcv X-ray(2.05Å) 05-Jan-11

3o8r Visualizing atp-dependent RNA translocation by the ns3 helicase from hcv X-ray(2.3Å) 05-Jan-11

3p9d The crystal structure of yeast cct reveals intrinsic asymmetry of eukaryotic cytosolic chaperonins X-ray(3.8Å) 06-Jul-11

3p9e The crystal structure of yeast cct reveals intrinsic asymmetry of eukaryotic cytosolic chaperonins X-ray(3.8Å) 06-Jul-11

3pux Crystal structure of an outward-facing mbp-maltose transporter complex bound to adp-bef3 X-ray(2.3Å) 10-Aug-11

3tmi Structural basis for RNA recognition and activation of rig-i X-ray(2.9Å) 21-Sep-11

4aol The crystal structures of the eukaryotic chaperonin cct reveal its functional partitioning X-ray(3.8Å) 20-Mar-13

4apk The crystal structures of the eukaryotic chaperonin cct reveal its functional partitioning X-ray(3.8Å) 20-Mar-13

4d8q Molecular architecture of the eukaryotic chaperonin tric/cct derived by a combination of chemical crosslinking and mass-spectrometry, xl- ms X-ray(3.8Å) 23-May-12

4d8r Molecular architecture of the eukaryotic chaperonin tric/cct derived by a combination of chemical crosslinking and mass-spectrometry, xl- ms X-ray(3.8Å) 23-May-12

4dbq Myosin vi d179y (md-insert2-cam, delta-insert1) post-rigor state X-ray(2.6Å) 30-Jan-13

4j0b Structure of mitochondrial hsp90 (trap1) with adp-bef3 X-ray(2.35Å) 22-Jan-14

4ncj Crystal structure of pyrococcus furiosis rad50 r805e mutation with adp beryllium flouride X-ray(2Å) 05-Mar-14

4pkn Crystal structure of the football-shaped groel-groes2-(adpbefx)14 complex containing substrate rubisco X-ray(3.66Å) 20-Aug-14

4pko Crystal structure of the football-shaped groel-groes2-(adpbefx)14 complex X-ray(3.84Å) 20-Aug-14

4pu9 E. Coli gyrb 43-kda n-terminal fragment in complex with adp-bef3 X-ray(2.4Å) 24-Sep-14

5he9 Bacterial initiation protein in complex with phage inhibitor protein X-ray(1.9Å) 08-Jun-16

5i0h Crystal structure of myosin x motor domain in pre-powerstroke state X-ray(1.8Å) 07-Sep-16

5ltj Crystal structure of the prp43-adp-bef3 complex (in orthorhombic space group) X-ray(1.78Å) 25-Jan-17

5ltk Crystal structure of the prp43-adp-bef3 complex (in hexagonal space group) X-ray(3.24Å) 25-Jan-17

5o9g Structure of nucleosome-chd1 complex 11-Oct-17

5sup Crystal structure of the sub2-yra1 complex in association with RNA X-ray(2.6Å) 18-Jan-17

5tth Heterodimeric spycatcher/spytag-fused zebrafish trap1 in atp/adp- hybrid state X-ray(3.2Å) 23-Aug-17

5uie Vps4-vta1 complex 12-Apr-17

6ap1 Vps4p-vta1p complex with peptide binding to the central pore of vps4p 06-Dec-17

6bmf Vps4p-vta1p complex with peptide binding to the central pore of vps4p 06-Dec-17

6fws Structure of ding in complex with ssdna and adpbef X-ray(2.5Å) 19-Dec-18

6g0l Structure of two molecules of the chromatin remodelling enzyme chd1 bound to a nucleosome 22-Aug-18

6gej Chromatin remodeller-nucleosome complex at 3.6 a resolution. 17-Oct-18

6gen Chromatin remodeller-nucleosome complex at 4.5 a resolution. 17-Oct-18

6ndy Vps4 with cyclic peptide bound in the central pore 21-Aug-19

6omb Cdc48 hexamer (subunits a to e) with substrate bound to the central pore 17-Jul-19

6oo2 Vps4 with cyclic peptide bound in the central pore 21-Aug-19

6opc Cdc48 hexamer in a complex with substrate and shp1(ubx domain) 10-Jul-19

6pek Structure of spastin hexamer (subunit a-e) in complex with substrate peptide 04-Dec-19

6pen Structure of spastin hexamer (whole model) in complex with substrate peptide 04-Dec-19

6uv1 Crystal structure of RNA helicase ddx17 in complex of ru10 RNA X-ray(2.31Å) 01-Jan-20

6uv2 Crystal structure of the core domain of RNA helicase ddx17 with RNA pri-125a-oligo1 X-ray(1.89Å) 01-Jan-20

6uv3 Crystal structure of the core domain of RNA helicase ddx17 with RNA pri-125a-oligo2 X-ray(1.6Å) 01-Jan-20

6uv4 Crystal structure of the core domain of RNA helicase ddx17 with RNA pri-18a-oligo1 X-ray(1.7Å) 01-Jan-20

6vz4 Cryo-em structure of sth1-arp7-arp9-rtt102 bound to the nucleosome in adp beryllium fluoride state 02-Dec-20

7mhs Structure of p97 (subunits a to e) with substrate engaged 11-May-22

7pli Dead-box helicase dbpa bound to single stranded RNA and adp/bef3 X-ray(2.5Å) 07-Sep-22

7pmm Dead-box helicase dbpa in the active conformation bound to a ss/dsrna junction and adp/bef3 X-ray(3Å) 14-Sep-22

7pmq Dead-box helicase dbpa in the active conformation bound to a hairpin loop RNA and adp/bef3 X-ray(3.22Å) 14-Sep-22

7w1m Cryo-em structure of human cohesin-ctcf-DNA complex 31-May-23

7y04 Hsp90-ahr-p23 complex 04-Jan-23

8enk Crystal structure of uap56 in complex with tho1, the yeast homolog of human sarnp X-ray(2.5Å) 16-Aug-23

8gja Rad51c-xrcc3 structure X-ray(2.6Å) 16-Aug-23

8h77 Hsp90-ahr-p23-xap2 complex 04-Jan-23

8qyq Beta-cardiac myosin s1 fragment in the pre-powerstroke state complexed to mavacamten X-ray(2.61Å) 13-Dec-23

8qyr Beta-cardiac myosin motor domain in the pre-powerstroke state complexed to mavacamten X-ray(1.8Å) 13-Dec-23

8skz Cryo-em structure of ddm1-hells chimera bound to the nucleosome 20-Nov-24

8vam Structure of the e. Coli clamp loader bound to the beta clamp in a semi-open conformation 27-Mar-24

8vap Structure of the e. Coli clamp loader bound to the beta clamp in a fully-open conformation 27-Mar-24

8vaq Structure of the e. Coli clamp loader bound to the beta clamp in a closed-dna1 conformation 27-Mar-24

8var Structure of the e. Coli clamp loader bound to the beta clamp in a closed-dna2 conformation 27-Mar-24

8vas Structure of the e. Coli clamp loader bound to the beta clamp in an altered-collar conformation 27-Mar-24

8wto Cryo-em structure of jasmonic acid transporter abcg16 in outward conformation 23-Oct-24

9ear Chd1-nucleosome complex (closed state) 07-May-25

9es4 Adp:bef3-bound human mitochondrial hsp60-hsp10 football complex 09-Apr-25

9es5 Adp:bef3-bound human mitochondrial hsp60-hsp10 half-football complex 09-Apr-25

9es6 Adp:bef3-bound human mitochondrial hsp60 double-ring complex 09-Apr-25

9gd3 Structure of a mononucleosome bound by one copy of chd1 with the dbd on the exit-side DNA. 18-Sep-24

9jao The structure of smarcad1 bound to the hexasome in the presence of adp-befx 30-Apr-25