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Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator (Space group : P21)

X-ray diffraction
2.15Å resolution
PDB entry 4ogp coloured by chain, front view.
PDB entry 4ogp coloured by chain, side view.
PDB entry 4ogp coloured by chain, top view.
Source organism: Saccharomyces cerevisiae S288C
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1
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Assembly Name: Deadenylation-dependent mRNA-decapping factor PAT1
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Multimeric state: monomeric
Accessible surface area: 16870.69 Å2
Buried surface area: 651.34 Å2
Dissociation area: 231.22 Å2
Dissociation energy (ΔGdiss): -10.07 kcal/mol
Dissociation entropy (TΔSdiss): 3.91 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-150532
Assembly 2 (preferred)
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Assembly Name: Deadenylation-dependent mRNA-decapping factor PAT1
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Multimeric state: monomeric
Accessible surface area: 16884.45 Å2
Buried surface area: 534.98 Å2
Dissociation area: 238.04 Å2
Dissociation energy (ΔGdiss): -8.24 kcal/mol
Dissociation entropy (TΔSdiss): 3.76 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-150532

Macromolecules

Deadenylation-dependent mRNA-decapping factor PAT1
Chains: A, B
Length: 330 amino acids
Theoretical weight: 38.48 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli
UniProt:
  • Canonical: P25644 (Residues: 473-796; Coverage: 41%)
Gene names: MRT1, PAT1, YCR077C, YCR77C
Pfam: Topoisomerase II-associated protein PAT1
InterPro:
DNA topoisomerase 2-associated protein PAT1 in PDB entry 4ogp, assembly 2, front view.
DNA topoisomerase 2-associated protein PAT1 in PDB entry 4ogp, assembly 2, side view.
DNA topoisomerase 2-associated protein PAT1 in PDB entry 4ogp, assembly 2, top view.
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