› 3vfj

X-ray diffraction
2.05Å resolution

The structure of monodechloro-teicoplanin in complex with its ligand, using MBP as a ligand carrier

Released:
DOI: 10.2210/pdb3vfj/pdb
PDB entry 3vfj coloured by chain, front view.
PDB entry 3vfj coloured by chain, side view.
PDB entry 3vfj coloured by chain, top view.
Source organisms:
Primary publication:
Structure of the complex between teicoplanin and a bacterial cell-wall peptide: use of a carrier-protein approach.
Economou NJ, Zentner IJ, Lazo E, Jakoncic J, Stojanoff V, Weeks SD, Grasty KC, Cocklin S, Loll PJ
Acta Crystallogr D Biol Crystallogr 69 520-33 (2013)
PMID: 23519660

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-142624 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Maltose/maltodextrin-binding periplasmic protein Chain: A
Molecule details ›
Chain: A
Length: 378 amino acids
Theoretical weight: 41.34 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P0AEX9 (Residues: 27-392; Coverage: 99%)
Gene names: JW3994, b4034, malE
Sequence domains: Bacterial extracellular solute-binding protein
Structure domains: Periplasmic binding protein-like II
MonodeChloro- Teicoplanin A2-2 Chain: G
Molecule details ›
Chain: G
Length: 7 amino acids
Theoretical weight: 1.17 KDa
Source organism: Actinoplanes teichomyceticus

Ligands and Environments

7 bound ligands:
Ligand ZN 8 x ZN
Ligand ACT 2 x ACT
Ligand CAC 2 x CAC
Ligand GCS 1 x GCS
Ligand T55 1 x T55
Ligand NAG 1 x NAG
Ligand MAN 1 x MAN
5 modified residues:
Ligand CCS 1 x CCS
Ligand DAL 2 x DAL
Ligand GHP 3 x GHP
Ligand 3MY 1 x 3MY
Ligand OMX 1 x OMX

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-E
Spacegroup: C2221
Unit cell:
a: 40.32Å b: 123.61Å c: 156.74Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.19 0.188 0.231
Expression system: Escherichia coli

Quick links

Citations

2 review citations

Approved Glycopeptide Antibacterial Drugs: Mechanism of Action and Resistance.
Zeng et al. (2016)
1 more

5 mentions without citation

Antibiotics and Carbohydrate-Containing Drugs Targeting Bacterial Cell Envelopes: An Overview.
Riu et al. (2022)
4 more