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 pan•dit |
PANDIT Protein and Associated NucleotideDomains with Inferred Trees |
| (View raw data for PF01193 - RNA_pol_L) |
| RNA polymerase Rpb3/Rpb11 dimerisation domain |
| (Pfam reference: accession no. PF01193) |
| (Interpro reference: accession no. IPR011261) |
| sequences | alignment | phylogeny |
| amino acids (Pfam-A seed alignment) |
140 sequences @ 379 aa (ave. pairwise identity: 0.31) (view Jalview alignment from Pfam) |
New Hampshire format (total tree length: 63.88) |
| nucleotides (available for above) |
135 sequences @ 1137 bp (ave. pairwise identity: 0.43) |
New Hampshire format (total tree length: 50.30) |
|
amino acids, restricted set (corresp. to available nt seqs) |
135 sequences @ 379 aa (ave. pairwise identity: 0.31) |
New Hampshire format (total tree length: 61.64) |