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Structural Analysis


The following are links to the various structural analysis tools we have available at the EBI.

Tool Description
Advanced PDB search   More Information & Help Documentation PDB advanced search tool.
DaliLite   More Information & Help Documentation This is a program for pairwise structure comparison. Compare your structure(first structure) to a reference structure(second structure).
EMsearch A search tool for EMDB.
MaxSprout   More Information & Help Documentation Reconstruction of 3D coordinates from C(alpha) trace.
NMR@PDBe   More Information & Help Documentation Tools for analysis of NMR structures in the PDB.
PDBe Services A complete list of the tools and services the Protein Databank in Europe (PDBe) group have to offer.
PDBefold   More Information & Help Documentation Secondary Structure Matching (SSM) service for comparing and aligning 3D protein structures; search for structures that are similar to that of a reference protein, and visualise sumperimposed structures. This service replaces DALI service at the EBI.
PDBeMotif   More Information & Help Documentation Query and analysis of ligands, sequence and structure motifs, their relative position and the neighbouring environment.
PDBePISA   More Information & Help Documentation Search and analysis of protein interfaces, surfaces and assemblies. Can be used to predict probable quarternary structures (assemblies).
PDBeXplore   More Information & Help Documentation Browse, list and analyse the structural knowledge embodied in the PDB based on classification systems that are familiar and intuitive to molecular biologists, biochemists and other life scientists.
PROCOGNATE   More Information & Help Documentation PROCOGNATE is a database of cognate ligands for the domains of enzyme structures in CATH, SCOP and Pfam.
Tempura New Tempura is a function prediction tool and local structural comparison service. It uses the "reverse template" approach published as part of the ProFunc server but has been modified to allow the user to specify the amino acids to be used in the template generation process.


Please Note


The EBI ReLiBase mirror (http://relibase.ebi.ac.uk/) was phased out in January, 2008. However, the up-to-date version of this service is still available from the Cambridge Crystallographic Data Centre (CCDC) at http://relibase.ccdc.cam.ac.uk/.


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