2013

Biomolecular Forms and Functions, A Celebration of 50 years of the Ramachandran Map. (2013), p.62-75
Reference Module in Chemistry, Molecular Sciences and Chemical Engineering. (2013), doi: 10.1016/B978-0-12-409547-2.02534-8
Encyclopedia of Biological Chemistry. Volume 3, (2013), p.611-617
245th National Meeting of the American Chemical Society. 7 April 2013, (2013), doi:
245th National Meeting of the American Chemical Society. 7 April 2013, (2013), doi:
BMC bioinformatics. Jan 16, Volume 14, (2013), p.17-2105-14-17
Nucleic Acids Research. Volume 41, Number D1, (2013), p.D48–D55
Methods in molecular biology (Clifton, N.J.). Volume 930, (2013), p.179-214
Nucleic Acids Research. Volume 41, Number D1, (2013), p.D773–D780 doi:
Nucleic Acids Research. Volume 41, Number D1, (2013), p.D773–D780
Database: the journal of biological databases and curation. Volume 2013, (2013),
Database: the journal of biological databases and curation. Volume 2013, (2013),
PLoS Computational Biology. Volume 9, Number 6, (2013), p.e1003089 doi:
Nucleic Acids Research. Volume 41, Number D1, (2013), p.D226–D232
International journal of molecular sciences. Volume 14, Number 8, (2013), p.15423–15458
Nucleic acids research. Volume 41, Number D1, (2013), p.D1222–D1227 doi:
Nucleic acids research. Volume 41, Number D1, (2013), p.D1234–D1240
Biophysical Journal. Volume 104, Number 2, (2013), p.534a
Nucleic acids research. Volume 41, Number D1, (2013), p.D1234–D1240 doi:
Nucleic acids research. Volume 41, Number D1, (2013), p.D773–D780 doi:
Nucleic Acids Research. Volume 41, (2013), p.D530–535 doi: 10.1093/nar/gks1050
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. Volume 19, (2013), p.224–228
Database: The Journal of Biological Databases and Curation. Volume 2013, (2013), doi:
Nucleic acids research. Volume 41, Number D1, (2013), p.D43–D47
Drug discovery today. Aug 7, Volume 18, Number 7-8, (2013), p.350-357
Methods in molecular biology (Clifton, N.J.). Volume 1021, (2013), p.89-105 doi:
PLoS Computational Biology. Volume 9, (2013), p.e1002803

2012

Artificial Intelligence: Methodology, Systems, and Applications. (2012), p.103–111
Evolutionary Genomics: Statistical and Computational Methods. Volume 1, (2012), New York, p.203-235
Codon Evolution. (2012), Oxford, p.ix-x
Methods and Principles in Medicinal Chemistry. Volume 54, (2012), p.155-167
Pattern Recognition in Bioinformatics. 7th IAPR International Conference, PRIB 2012, Tokyo, Japan, November 8-10, 2012. Proceedings. Volume 7632 LNBI, (2012), p.14-25 doi: 10.1007/978-3-642-34123-6_2
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Volume 7605 LNBI, (2012), p.342-361
Nucleic acids research. Volume 40, Number D1, (2012), p.D84–D90
Nature. Volume 489, Number 7414, (2012), p.49–51
Plant Cell. Volume 24, Number 6, (2012), p.2248–2256
Biotechnology Journal. Volume 7, Number 8, (2012), p.958–972
Acta Crystallographica Section F. Volume 68, Number Part 7, (2012), p.744-750 doi: 10.1107/S1744309112020167
Proceedings of the International Conference on Language Resources and Evaluation. (2012),
Database: The Journal of Biological Databases and Curation. Volume 2012, (2012),
GigaScience. Volume 1, Number 1, (2012), p.2
Methods in molecular biology (Clifton, NJ). Volume 929, (2012), p.193
BMC genomics. Volume 13, Number 1, (2012), p.218
The Journal of Physical Chemistry B. Volume 116, Number 16, (2012), p.4754-4759 doi: 10.1021/jp2122054
The Journal of physical chemistry. B. Volume 116, Number 16, (2012), p.4754–4759
Database: the journal of biological databases and curation. Volume 2012, (2012), doi:
Proceedings of the National Academy of Sciences. Volume 109, Number 50, (2012), p.20461–20466
PLoS Computational Biology. Volume 8, (2012), p.e1002533
International Tables for Crystallography. Volume F, Number ch. 24.1, (2012), p.827-832 doi: 10.1107/97809553602060000896
Nucleic Acids Res. Volume 40, Number Web Server issue, (2012), p.W276-80 doi:
Nucleic acids research. Dec 2, Volume 40(1):D580-6, Number Database issue, (2012), p.D580-D583
Biomedical Informatics Insights. Volume 5, Number Suppl. 1, (2012), p.1
Nucleic Acids Research. Volume 40 , Issue Database issue, Number Database issue, (2012), p.D445-D452 doi: 10.1093/nar/gkr998
PLoS computational biology. Jan, Volume 8, Number 1, (2012), p.e1002333
Proceedings of the National Academy of Sciences. Volume 109, Number 21, (2012), p.8127–8132
BMC Bioinformatics. Volume 13, Number Suppl 17, (2012), p.S11
GI WORKGROUP “ONTOLOGIES IN BIOMEDICINE AND LIFE SCIENCES”(OBML). (2012),
Bioinformatics (Oxford, England). May 15, Volume 28, Number 10, (2012), p.1402-1403
Nature Reviews Genetics. Volume 14, Number 2, (2012), p.89–99
Advances in Experimental Medicine and Biology. Volume 736, (2012), p.19-57
Proteomics. Volume 12, Number 10, (2012), p.1656–1662
Acta Crystallographica Section D. Volume 68, Number Pt 4, (2012), p.478-483 doi: 10.1107/S0907444911050359
Proceedings of the 5th International Symposium on Semantic Mining in Biomedicine. (2012), doi: 10.5167/uzh-64476
Bioinformatics. Volume 28, Number 8, (2012), p.1057–1057
Future medicinal chemistry. Oct, Volume 4, Number 15, (2012), p.1865-1867
Communications of the ACM. Volume 55, Number 11, (2012), p.65–75
Methods in molecular biology (Clifton, NJ). Volume 803, (2012), p.273
Bioinformatics (Oxford, England). Oct 15, Volume 28, Number 20, (2012), p.2648-2653
Nucleic acids research. Volume 40, Number D1, (2012), p.D343–D350
BMC bioinformatics. Volume 13, Number 1, (2012), p.217
PLoS computational biology. Volume 8, Number 7, (2012), p.e1002554 doi:
International Tables for Crystallography. Volume F, Issue ch.21.1, Number ch.21.1, (2012), p.649-661 doi: 10.1107/97809553602060000879
Nucleic acids research. Volume 40, Number D1, (2012), p.D9–D12
Future Med. Chem.. Volume 4, Number 15, (2012), p.1865–1867
International review of neurobiology. Volume 103, (2012), p.89 doi:
GigaScience. Volume 1, (2012), doi:
Mammalian genome : official journal of the International Mammalian Genome Society. Sep 19, Volume 23, Number 9-10, (2012), p.641-652
PLoS Computational Biology. Volume 8, Number 1, (2012), p.e1002333
Nucleic Acids Research. Volume 40, Number D1, (2012), p.D559–D564
Studies in health technology and informatics. Volume 180, (2012), p.569–573
Studies in health technology and informatics. Volume 180, (2012), p.569–573
Biomedical informatics insights. Volume 5, Number Suppl. 1, (2012), p.175
Journal of proteome research. Volume 11, Number 4, (2012), p.2014–2031
Methods Mol Biol. Volume 803, (2012), p.273–296
Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery. 3, Volume 2, Number 2, (2012), p.116-137 doi: 10.1002/widm.54
Database: The Journal of Biological Databases and Curation. Volume 2012, (2012), doi:
Bioinformatics. Volume 28, Number 24, (2012), p.3169–3177
Bioinformatics. Volume 28, Number 8, (2012), p.1057

2011

Uncertainty in Artificial Intelligence. 2011, (2011), doi:
Proceedings of the International Conference on Biomedical Ontology (ICBO2011), Buffalo, USA. (2011),
Origami 5: Fifth International Meeting of Origami Science, Mathematics, and Education. (2011), p.455
Methods in molecular biology (Clifton, NJ). Volume 694, (2011), p.229–236
Workshop on Working with Multiple Biomedical Ontologies (WoMBO at ICBO 2011), Buffalo, NY, USA. (2011),
Nat Struct Mol Biol. Dec, Volume 18, Number 12, (2011), p.1304–1316
Journal of Biological Chemistry. Volume 286, Number 44, (2011), p.38321–38328
Database: the journal of biological databases and curation. Volume 2011, (2011),
Bioinformatics. Volume 27, Number 24, (2011), p.3331–3332
Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. (2011), p.333–340
Acta Crystallographica Section D. Volume 67, Number Part 4, (2011), p.376-385 doi: 10.1107/S0907444911007232
Philos Trans R Soc Lond B Biol Sci. Jan, Volume 366, Number 1561, (2011), p.6–8 doi: 10.1098/rstb.2010.0298
Philos Trans R Soc Lond B Biol Sci. Jan, Volume 366, Number 1561, (2011), p.51–63 doi: 10.1098/rstb.2010.0286
Database: the journal of biological databases and curation. Volume 2011, (2011),
Proceedings of the International Conference on Biomedical Ontology (ICBO), CEUR-WS. Volume 833, (2011),
Proceedings of the 29th Leeds Annual Statistical Research Workshop. (2011), p.65-69 doi:
Cancer Systems Biology, Bioinformatics and Medicine. (2011), p.153–164
Nucleic Acids Research. Volume 39, (2011), p.D19-D21 doi:
Methods in molecular biology (Clifton, NJ). Volume 696, (2011), p.149–160
Nucleic acids research. Volume 39, Number suppl 1, (2011), p.D28–D31
Methods Mol. Biol. Volume 694, (2011), p.25–35 doi:
Nucleic acids research. Volume 39, Number suppl 1, (2011), p.D800
Current Topics in Medicinal Chemistry. Volume 11, Number 10, (2011), p.1292–1300
Proceedings of the first SHAPES workshop. (2011),
Proteomics. Volume 11, Number 6, (2011), p.1015-6
Nucleic Acids Res. Volume 39, Number Database issue, (2011), p.D28-31 doi:
Mol Biotechnol. Jun, Volume 48, Number 2, (2011), p.183–198 doi: 10.1007/s12033-010-9372-4
BMC Research Notes. Volume 4, Number 1, (2011), p.272
Methods Mol Biol. Volume 694, (2011), p.37–47
Curr Protoc Hum Genet. 2, Volume Chapter 6, (2011), United States, p.Unit6.11 doi: 10.1002/0471142905.hg0611s69
Database: the journal of biological databases and curation. Volume 2011, (2011),
Science signaling. Feb 15, Volume 4, Number 160, (2011), p.pe10
Future Med Chem. Jan, Volume 3, Number 1, (2011), p.65–78 doi: 10.4155/fmc.10.280

2010

Methods in Enzymology . Volume 483, (2010), p.73-90 doi: 10.1016/S0076-6879(10)83004-6
Proceeding of the 2010 conference on Formal Ontology in Information Systems: Proceedings of the Sixth International Conference (FOIS 2010). (2010), p.257–270
Proceeding of the 2010 conference on Formal Ontology in Information Systems: Proceedings of the Sixth International Conference (FOIS 2010). (2010), p.271–284
Acoustics Speech and Signal Processing (ICASSP), 2010 IEEE International Conference on. (2010), p.2178–2181
Nucleic acids research. Volume 38, Number suppl 1, (2010), p.D211–D222
Acta Crystallographica Section F: Structural Biology and Crystallization Communications. Volume 66, Number 10, (2010), p.1148–1152
PLoS computational biology. Volume 6, Number 12, (2010), p.e1001020
Future Med Chem. Volume 2, Number 6, (2010), p.903–907
Journal of Computational Chemistry. Volume 31, Number Issue 1, (2010), p.133-143 doi: 10.1002/jcc.21303
Nature Methods. Volume 8, Number 1, (2010), p.59–60
Semantic Applications in Life Sciences: Proceedings of the 4th International Workshop on Formal Biomedical Knowledge Representation, KR-MED. (2010), p.9–10
BMC bioinformatics. Volume 11, Number 1, (2010), p.133
Nucleic Acids Res. Volume 38, Number Database issue, (2010), p.D870-1
Genome research. Volume 20, Number 5, (2010), p.685–692
Nucleic acids research. Volume 38, Number suppl 1, (2010), p.D863–D869
Expert Review of Proteomics. Volume 7, Number 3, (2010), p.319–322
Journal of Bacteriology. Volume 192, Number Issue 19, (2010), p.5143-5150 doi: 10.1128/JB.00315-10
Nucleic acids research. Volume 38, Number suppl 1, (2010), p.D557–D562
Nucleic acids research. Volume 38, Number suppl 1, (2010), p.D863–D869
Semantic Applications in Life Sciences: Proceedings of the 4th International Workshop on Formal Biomedical Knowledge Representation, KR-MED. (2010), p.9–10
Nature. Volume 468, Number 7325, (2010), p.765–765
Journal of Integrative Bioinformatics. Volume 7, Number Issue 3, (2010), p.123 doi: 10.2390/biecoll-jib-2010-123
Proceedings of the 1st International Digital Preservation Interoperability Framework Symposium. (2010), doi: 10.1145/2039263.2039267
Nucleic acids research. Volume 38, Number suppl 1, (2010), p.D227–D233
Biochemical Society Transactions. Volume 38, Number 4, (2010), p.879
Human molecular genetics. Volume 19, Number R2, (2010), p.R204–R209
Nucleic acids research. Volume 38, Number suppl 2, (2010), p.W695–W699
Methods in Molecular Biology. Volume 609, (2010), p.285-306
PLoS computational biology. Volume 6, Number 9, (2010), p.e1000941
Proceeding of the 2010 conference on Formal Ontology in Information Systems. (2010), p.271–284
Methods Mol Biol. Volume 609, (2010), p.59–82 doi: 10.1007/978-1-60327-241-4_4
IEEE/ACM Transactions on Computational Biology and Bioinformatics. Volume 7, (2010), p.183-187
Nucleic acids research. Volume 38, Number suppl 2, (2010), p.W155–W160
Curr Protoc Protein Sci. Volume Chapter 25, (2010), p.Unit 25 4
J Proteomics Bioinform. 3, Volume 3, (2010), p.099-100 doi: 10.4172/jpb.1000127
Nucleic Acids Res. Volume 38, Number Web Server issue, (2010), p.W155-60 doi:
Nucleic acids research. Volume 38, Number Database issue, (2010), p.D17-D25
Genome Biology. Volume 11, (2010), p.R74