2013

Biomolecular Forms and Functions, A Celebration of 50 years of the Ramachandran Map. (2013), p.62-75
Reference Module in Chemistry, Molecular Sciences and Chemical Engineering. (2013), doi: 10.1016/B978-0-12-409547-2.02534-8
Encyclopedia of Biological Chemistry. Volume 3, (2013), p.611-617
245th National Meeting of the American Chemical Society. 7 April 2013, (2013), doi:
245th National Meeting of the American Chemical Society. 7 April 2013, (2013), doi:
Nucleic acids research. Volume 41, Number D1, (2013), p.D43–D47
Drug discovery today. Aug 7, Volume 18, Number 7-8, (2013), p.350-357
Methods in molecular biology (Clifton, N.J.). Volume 1021, (2013), p.89-105 doi:
BMC bioinformatics. Jan 16, Volume 14, (2013), p.17-2105-14-17
Methods in molecular biology (Clifton, N.J.). Volume 930, (2013), p.179-214
Nucleic Acids Research. Volume 41, Number D1, (2013), p.D773–D780 doi:
Database: the journal of biological databases and curation. Volume 2013, (2013),
Database: the journal of biological databases and curation. Volume 2013, (2013),
PLoS Computational Biology. Volume 9, Number 6, (2013), p.e1003089 doi:
International journal of molecular sciences. Volume 14, Number 8, (2013), p.15423–15458
Nucleic acids research. Volume 41, Number D1, (2013), p.D1222–D1227 doi:
Nucleic acids research. Volume 41, Number D1, (2013), p.D1234–D1240
PLoS Computational Biology. Volume 9, (2013), p.e1002803
Biophysical Journal. Volume 104, Number 2, (2013), p.534a
Nucleic acids research. Volume 41, Number D1, (2013), p.D1234–D1240 doi:
Nucleic acids research. Volume 41, Number D1, (2013), p.D773–D780 doi:
Nucleic Acids Research. Volume 41, Number D1, (2013), p.D48–D55
Nucleic Acids Research. Volume 41, Number D1, (2013), p.D773–D780
Nucleic Acids Research. Volume 41, (2013), p.D530–535 doi: 10.1093/nar/gks1050
Database: The Journal of Biological Databases and Curation. Volume 2013, (2013), doi:
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. Volume 19, (2013), p.224–228
Nucleic Acids Research. Volume 41, Number D1, (2013), p.D226–D232

2012

Artificial Intelligence: Methodology, Systems, and Applications. (2012), p.103–111
Evolutionary Genomics: Statistical and Computational Methods. Volume 1, (2012), New York, p.203-235
Codon Evolution. (2012), Oxford, p.ix-x
Methods and Principles in Medicinal Chemistry. Volume 54, (2012), p.155-167
Pattern Recognition in Bioinformatics. 7th IAPR International Conference, PRIB 2012, Tokyo, Japan, November 8-10, 2012. Proceedings. Volume 7632 LNBI, (2012), p.14-25 doi: 10.1007/978-3-642-34123-6_2
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Volume 7605 LNBI, (2012), p.342-361
Biomedical informatics insights. Volume 5, Number Suppl. 1, (2012), p.175
Journal of proteome research. Volume 11, Number 4, (2012), p.2014–2031
Nucleic Acids Research. Volume 40, Number D1, (2012), p.D559–D564
Studies in health technology and informatics. Volume 180, (2012), p.569–573
PLoS computational biology. Jan, Volume 8, Number 1, (2012), p.e1002333
BMC Bioinformatics. Volume 13, Number Suppl 17, (2012), p.S11
Studies in health technology and informatics. Volume 180, (2012), p.569–573
Methods Mol Biol. Volume 803, (2012), p.273–296
Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery. 3, Volume 2, Number 2, (2012), p.116-137 doi: 10.1002/widm.54
Bioinformatics. Volume 28, Number 24, (2012), p.3169–3177
Proceedings of the International Conference on Language Resources and Evaluation. (2012),
Database: The Journal of Biological Databases and Curation. Volume 2012, (2012),
Plant Cell. Volume 24, Number 6, (2012), p.2248–2256
Bioinformatics. Volume 28, Number 8, (2012), p.1057–1057
Future medicinal chemistry. Oct, Volume 4, Number 15, (2012), p.1865-1867
Biotechnology Journal. Volume 7, Number 8, (2012), p.958–972
Acta Crystallographica Section F. Volume 68, Number Part 7, (2012), p.744-750 doi: 10.1107/S1744309112020167
The Journal of Physical Chemistry B. Volume 116, Number 16, (2012), p.4754-4759 doi: 10.1021/jp2122054
Communications of the ACM. Volume 55, Number 11, (2012), p.65–75
The Journal of physical chemistry. B. Volume 116, Number 16, (2012), p.4754–4759
Methods in molecular biology (Clifton, NJ). Volume 929, (2012), p.193
Proceedings of the National Academy of Sciences. Volume 109, Number 50, (2012), p.20461–20466
Nucleic acids research. Volume 40, Number D1, (2012), p.D343–D350
International Tables for Crystallography. Volume F, Number ch. 24.1, (2012), p.827-832 doi: 10.1107/97809553602060000896
Nucleic acids research. Dec 2, Volume 40(1):D580-6, Number Database issue, (2012), p.D580-D583
Biomedical Informatics Insights. Volume 5, Number Suppl. 1, (2012), p.1
PLoS computational biology. Volume 8, Number 7, (2012), p.e1002554 doi:
Nucleic acids research. Volume 40, Number D1, (2012), p.D9–D12
Future Med. Chem.. Volume 4, Number 15, (2012), p.1865–1867
Nucleic Acids Research. Volume 40 , Issue Database issue, Number Database issue, (2012), p.D445-D452 doi: 10.1093/nar/gkr998
Nucleic Acids Res. Volume 40, Number Web Server issue, (2012), p.W276-80 doi:
GI WORKGROUP “ONTOLOGIES IN BIOMEDICINE AND LIFE SCIENCES”(OBML). (2012),
Bioinformatics (Oxford, England). May 15, Volume 28, Number 10, (2012), p.1402-1403
Proceedings of the National Academy of Sciences. Volume 109, Number 21, (2012), p.8127–8132
PLoS Computational Biology. Volume 8, Number 1, (2012), p.e1002333
Acta Crystallographica Section D. Volume 68, Number Pt 4, (2012), p.478-483 doi: 10.1107/S0907444911050359
Nature Reviews Genetics. Volume 14, Number 2, (2012), p.89–99
Advances in Experimental Medicine and Biology. Volume 736, (2012), p.19-57
Proteomics. Volume 12, Number 10, (2012), p.1656–1662
Proceedings of the 5th International Symposium on Semantic Mining in Biomedicine. (2012), doi: 10.5167/uzh-64476
Database: The Journal of Biological Databases and Curation. Volume 2012, (2012), doi:
Bioinformatics. Volume 28, Number 8, (2012), p.1057
Bioinformatics (Oxford, England). Oct 15, Volume 28, Number 20, (2012), p.2648-2653
Nucleic acids research. Volume 40, Number D1, (2012), p.D84–D90
Nature. Volume 489, Number 7414, (2012), p.49–51
Methods in molecular biology (Clifton, NJ). Volume 803, (2012), p.273
GigaScience. Volume 1, Number 1, (2012), p.2
BMC genomics. Volume 13, Number 1, (2012), p.218
Database: the journal of biological databases and curation. Volume 2012, (2012), doi:
International Tables for Crystallography. Volume F, Issue ch.21.1, Number ch.21.1, (2012), p.649-661 doi: 10.1107/97809553602060000879
Mammalian genome : official journal of the International Mammalian Genome Society. Sep 19, Volume 23, Number 9-10, (2012), p.641-652
BMC bioinformatics. Volume 13, Number 1, (2012), p.217
PLoS Computational Biology. Volume 8, (2012), p.e1002533
GigaScience. Volume 1, (2012), doi:
International review of neurobiology. Volume 103, (2012), p.89 doi:

2011

Uncertainty in Artificial Intelligence. 2011, (2011), doi:
Future Med Chem. Jan, Volume 3, Number 1, (2011), p.65–78 doi: 10.4155/fmc.10.280
Science signaling. Feb 15, Volume 4, Number 160, (2011), p.pe10
Methods in molecular biology (Clifton, NJ). Volume 694, (2011), p.229–236
Proceedings of the International Conference on Biomedical Ontology (ICBO2011), Buffalo, USA. (2011),
Nucleic acids research. Volume 39, Number suppl 1, (2011), p.D28–D31
Nucleic acids research. Volume 39, Number suppl 1, (2011), p.D800
Current Topics in Medicinal Chemistry. Volume 11, Number 10, (2011), p.1292–1300
Workshop on Working with Multiple Biomedical Ontologies (WoMBO at ICBO 2011), Buffalo, NY, USA. (2011),
Nat Struct Mol Biol. Dec, Volume 18, Number 12, (2011), p.1304–1316
Database: the journal of biological databases and curation. Volume 2011, (2011),
Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. (2011), p.333–340
Acta Crystallographica Section D. Volume 67, Number Part 4, (2011), p.376-385 doi: 10.1107/S0907444911007232
Cancer Systems Biology, Bioinformatics and Medicine. (2011), p.153–164
Database: the journal of biological databases and curation. Volume 2011, (2011),
Proceedings of the International Conference on Biomedical Ontology (ICBO), CEUR-WS. Volume 833, (2011),
Proceedings of the 29th Leeds Annual Statistical Research Workshop. (2011), p.65-69 doi:
Philos Trans R Soc Lond B Biol Sci. Jan, Volume 366, Number 1561, (2011), p.6–8 doi: 10.1098/rstb.2010.0298
Philos Trans R Soc Lond B Biol Sci. Jan, Volume 366, Number 1561, (2011), p.51–63 doi: 10.1098/rstb.2010.0286
Methods in molecular biology (Clifton, NJ). Volume 696, (2011), p.149–160
Nucleic Acids Research. Volume 39, (2011), p.D19-D21 doi:
Methods Mol. Biol. Volume 694, (2011), p.25–35 doi:
Proceedings of the first SHAPES workshop. (2011),
Origami 5: Fifth International Meeting of Origami Science, Mathematics, and Education. (2011), p.455
Proteomics. Volume 11, Number 6, (2011), p.1015-6
Nucleic Acids Res. Volume 39, Number Database issue, (2011), p.D28-31 doi:
Journal of Biological Chemistry. Volume 286, Number 44, (2011), p.38321–38328
Database: the journal of biological databases and curation. Volume 2011, (2011),
BMC Research Notes. Volume 4, Number 1, (2011), p.272
Bioinformatics. Volume 27, Number 24, (2011), p.3331–3332
Methods Mol Biol. Volume 694, (2011), p.37–47
Curr Protoc Hum Genet. 2, Volume Chapter 6, (2011), United States, p.Unit6.11 doi: 10.1002/0471142905.hg0611s69
Mol Biotechnol. Jun, Volume 48, Number 2, (2011), p.183–198 doi: 10.1007/s12033-010-9372-4

2010

Methods in Enzymology . Volume 483, (2010), p.73-90 doi: 10.1016/S0076-6879(10)83004-6
Proceeding of the 2010 conference on Formal Ontology in Information Systems: Proceedings of the Sixth International Conference (FOIS 2010). (2010), p.271–284
Acoustics Speech and Signal Processing (ICASSP), 2010 IEEE International Conference on. (2010), p.2178–2181
Proceeding of the 2010 conference on Formal Ontology in Information Systems: Proceedings of the Sixth International Conference (FOIS 2010). (2010), p.257–270
J Mol Recognit. Volume 23, Number 2, (2010), p.194–208 doi: 10.1002/jmr.992
Nature. Volume 468, Number 7325, (2010), p.765–765
International Journal of Artificial Organs. Volume 33, Number Issue 9, (2010), p.590-607 doi:
Genome Biol. Volume 11, Number 7, (2010), p.126
Current opinion in structural biology. Volume 20, Number 3, (2010), p.333–334
Proceeding of the 2010 conference on Formal Ontology in Information Systems. (2010), p.257–270
Nucleic acids research. Volume 38, Number suppl 1, (2010), p.D227–D233
PLoS computational biology. Volume 6, Number 12, (2010), p.e1001020
Methods in Molecular Biology. Volume 609, (2010), p.285-306
PLoS computational biology. Volume 6, Number 9, (2010), p.e1000941
Nucleic Acids Res. Jan, Volume 38, Number Database issue, (2010), p.D17–D25 doi: 10.1093/nar/gkp986
Human molecular genetics. Volume 19, Number R2, (2010), p.R204–R209
Journal of Computational Chemistry. Volume 31, Number Issue 1, (2010), p.133-143 doi: 10.1002/jcc.21303
IEEE/ACM Transactions on Computational Biology and Bioinformatics. Volume 7, (2010), p.183-187
Semantic Applications in Life Sciences: Proceedings of the 4th International Workshop on Formal Biomedical Knowledge Representation, KR-MED. (2010), p.9–10
Nucleic Acids Res. Volume 38, Number Database issue, (2010), p.D870-1
Nucleic acids research. Volume 38, Number suppl 1, (2010), p.D863–D869
Expert Review of Proteomics. Volume 7, Number 3, (2010), p.319–322
Journal of Bacteriology. Volume 192, Number Issue 19, (2010), p.5143-5150 doi: 10.1128/JB.00315-10
Nucleic acids research. Volume 38, Number Database issue, (2010), p.D17-D25
Nucleic acids research. Volume 38, Number suppl 1, (2010), p.D863–D869
Semantic Applications in Life Sciences: Proceedings of the 4th International Workshop on Formal Biomedical Knowledge Representation, KR-MED. (2010), p.9–10
Genome Biology. Volume 11, (2010), p.R74
Journal of Integrative Bioinformatics. Volume 7, Number Issue 3, (2010), p.123 doi: 10.2390/biecoll-jib-2010-123
Bulletin of Mathematical Biology. Volume 72, (2010), p.1820-1839
Proceedings of the 1st International Digital Preservation Interoperability Framework Symposium. (2010), doi: 10.1145/2039263.2039267
Biochemical Society Transactions. Volume 38, Number 4, (2010), p.879
Methods in Molecular Biology. Volume 609, (2010), p.3-15
Nucleic acids research. Volume 38, Number suppl 2, (2010), p.W695–W699
Database: the journal of biological databases and curation. Volume 2010, (2010),
Proceeding of the 2010 conference on Formal Ontology in Information Systems. (2010), p.271–284
Nucleic acids research. Volume 38, Number suppl 2, (2010), p.W155–W160
Nucleic acids research. Volume 38, Number suppl 1, (2010), p.D211–D222
Acta Crystallographica Section F: Structural Biology and Crystallization Communications. Volume 66, Number 10, (2010), p.1148–1152
Methods Mol Biol. Volume 609, (2010), p.59–82 doi: 10.1007/978-1-60327-241-4_4