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EBIToolsProtein Functional Analysis

InterProScan Sequence Search

This form allows you to query your sequence against InterPro. For more detailed information see the documentation for the perl stand-alone InterProScan package (Readme file or FAQ's), or the InterPro user manual or help pages.


Please Note: There is a new analysis application now available via InterProScan: HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes). HAMAP profiles are manually created by expert curators and identify proteins that are part of well-conserved bacterial, archaeal and plastid-encoded proteins families or subfamilies. The ScanRegExp application has been replaced by the PatternScan search software which uses new, more sensitive code developed by the PROSITE team. Contact support for more information about these changes.

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APPLICATIONS TO RUN Clear all Check all
BlastProDom FPrintScan HMMPIR HMMPfam HMMSmart
HMMTigr ProfileScan HAMAP patternScan SuperFamily SignalPHMM
TMHMM HMMPanther Gene3D  

Enter or Paste a PROTEIN Sequence in any format:
Upload a file:

PLEASE NOTE: Interactive job results are stored for 24 hours, email job results are stored for one week.
If you plan to use these services during a course please contact us using the email below.
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