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Ligand clusters for UniProt code Q55891

Ligand clusters for Q55891: Phycocyanobilin:ferredoxin oxidoreductase from Synechocystis sp. (strain PCC 6803 / Kazusa)

Top 6 (of 20) ligand clusters
Cluster 1.
3 ligand types
17 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
1 ligand type
4 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
2 ligands
Representative protein: 2d1eA  
JSmol
 

Structures

PDB   Schematic diagram
2d1eA    
4qcdA    
3f0mA    
3f0lA    
4eodA    
 more ...

 

 Cluster 1 contains 3 ligand types

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Ligand Description


 
1. Ligand: BLA × 14
Biliverdine IX alpha
PDB codes: 2d1e(A), 3ajg(A), 3f0l(A), 3f0m(A), 3i95(A), 3nb8(A), 3nb9(A), 4eoc(A), 4eod(A), 4eoe(A), 4qcd(A), 5b4h(A), 5b4i(A), 5b4j(A).


 
2. Ligand: BL3 × 2
3-[2-[(Z)-[3-(2-Carboxyethyl)-5-[(Z)-(3-Ethenyl-4- Methyl-5-Oxo-Pyrrol-2-Ylidene)methyl]-4-Methyl-
Pyrrol- 2-Ylidene]methyl]-5-[(Z)-(3-Ethenyl-4-Methyl-5-Oxo- Pyrrol-2-Ylidene)methyl]-4-Methyl-1h-
Pyrrol-3- Yl]propanoic acid
PDB codes: 3ajh(A), 3i94(A).


 
3. Ligand: 18B × 1
3-[2-[(Z)-[3-(2-Carboxyethyl)-5-[(Z)-(3-Ethenyl-4- Methyl-5-Oxo-Pyrrol-2-Ylidene)methyl]-4-Methyl-
Pyrrol- 2-Ylidene]methyl]-5-[(Z)-(4-Ethyl-3-Methyl-5-Oxo- Pyrrol-2-Ylidene)methyl]-4-Methyl-1h-
Pyrrol-3- Yl]propanoic acid
PDB code: 3i8u(X).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 3i94(A).

_Na
 
2. Metal: _NA × 1
PDB code: 2d1e(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 4
1,2-Ethanediol
PDB codes: 3f0l(A), 3f0m(A), 3nb8(A),

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 3f0l(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 3f0l(A), 3f0m(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 3f0l(A),

 

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