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Ligand clusters for UniProt code P25924
Ligand clusters for P25924: Siroheme synthase from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
6 ligand clusters
Cluster 1.
3 ligand types
4 ligands
Cluster 2.
3 ligand types
3 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
3 ligand types
14 ligands
Cluster 5.
2 ligand types
3 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6p5xA
Structures
PDB
Schematic diagram
6p5x
A
1pjt
A
6p7c
A
6ulu
A
6pr0
A
more ...
Cluster 1 contains 3 ligand types
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Ligand
Description
1. Ligand:
PO4 × 2
Phosphate ion
PDB codes:
1pjs
(A),
1pjt
(A).
2. Ligand:
PQ2 × 1
3,3',3'',3'''-[(7s,8s,12s,13s)-3,8,13,17- Tetrakis(carboxymethyl)-8,13-Dimethyl-7,8,12,13,20,24-
Hexahydroporphyrin-2,7,12,18-Tetrayl]tetrapropanoic acid
PDB code:
6veb
(A).
3. Ligand:
SHN × 1
3,3',3'',3'''-[(7s,8s,12s,13s)-3,8,13,17- Tetrakis(carboxymethyl)-8,13-Dimethyl-7,8,12,13-
Tetrahydroporphyrin-2,7,12,18-Tetrayl]tetrapropanoic acid
PDB code:
6p5x
(A).
Cluster 2 contains 3 ligand types
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Ligand
Description
1. Ligand:
NAD × 1
Nicotinamide-Adenine-Dinucleotide
PDB code:
1pjs
(A).
2. Ligand:
ACT × 1
Acetate ion
PDB code:
1pjq
(A).
3. Ligand:
NAD × 1
Nicotinamide-Adenine-Dinucleotide
PDB code:
6veb
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
NAD × 1
Nicotinamide-Adenine-Dinucleotide
PDB code:
1pjs
(A).
Cluster 4 contains 3 ligand types
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Ligand
Description
1. Ligand:
SAH × 2
S-Adenosyl-L-Homocysteine
PDB codes:
1pjs
(A),
1pjt
(A).
2. Ligand:
ACT × 1
Acetate ion
PDB code:
1pjq
(A).
3. Ligand:
SAH × 11
S-Adenosyl-L-Homocysteine
PDB codes:
6p5x
(A),
6p7c
(A),
6p7d
(A),
6pqz
(A),
6pr0
(A),
6pr1
(A),
6pr2
(A),
6pr3
(A),
6pr4
(A),
6ulu
(A),
6veb
(A).
Cluster 5 contains 2 ligand types
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Ligand
Description
1. Ligand:
PGE × 2
Triethylene glycol
PDB codes:
1pjq
(A),
1pjs
(A).
2. Ligand:
MES × 1
2-(N-Morpholino)-Ethanesulfonic acid
PDB code:
6pr2
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
PGE × 1
Triethylene glycol
PDB code:
1pjs
(A).