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Ligand clusters for UniProt code P25924

Ligand clusters for P25924: Siroheme synthase from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

6 ligand clusters
Cluster 1.
3 ligand types
4 ligands
Cluster 2.
3 ligand types
3 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
3 ligand types
14 ligands
Cluster 5.
2 ligand types
3 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6p5xA  
JSmol
 

Structures

PDB   Schematic diagram
6p5xA    
1pjtA    
6p7cA    
6uluA    
6pr0A    
 more ...

 

 Cluster 1 contains 3 ligand types

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Ligand Description


 
1. Ligand: PO4 × 2
Phosphate ion
PDB codes: 1pjs(A), 1pjt(A).


 
2. Ligand: PQ2 × 1
3,3',3'',3'''-[(7s,8s,12s,13s)-3,8,13,17- Tetrakis(carboxymethyl)-8,13-Dimethyl-7,8,12,13,20,24-
Hexahydroporphyrin-2,7,12,18-Tetrayl]tetrapropanoic acid
PDB code: 6veb(A).


 
3. Ligand: SHN × 1
3,3',3'',3'''-[(7s,8s,12s,13s)-3,8,13,17- Tetrakis(carboxymethyl)-8,13-Dimethyl-7,8,12,13-
Tetrahydroporphyrin-2,7,12,18-Tetrayl]tetrapropanoic acid
PDB code: 6p5x(A).

 

 Cluster 2 contains 3 ligand types

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Ligand Description


 
1. Ligand: NAD × 1
Nicotinamide-Adenine-Dinucleotide
PDB code: 1pjs(A).


 
2. Ligand: ACT × 1
Acetate ion
PDB code: 1pjq(A).


 
3. Ligand: NAD × 1
Nicotinamide-Adenine-Dinucleotide
PDB code: 6veb(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: NAD × 1
Nicotinamide-Adenine-Dinucleotide
PDB code: 1pjs(A).

 

 Cluster 4 contains 3 ligand types

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Ligand Description


 
1. Ligand: SAH × 2
S-Adenosyl-L-Homocysteine
PDB codes: 1pjs(A), 1pjt(A).


 
2. Ligand: ACT × 1
Acetate ion
PDB code: 1pjq(A).


 
3. Ligand: SAH × 11
S-Adenosyl-L-Homocysteine
PDB codes: 6p5x(A), 6p7c(A), 6p7d(A), 6pqz(A), 6pr0(A), 6pr1(A), 6pr2(A), 6pr3(A), 6pr4(A), 6ulu(A), 6veb(A).

 

 Cluster 5 contains 2 ligand types

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Ligand Description


 
1. Ligand: PGE × 2
Triethylene glycol
PDB codes: 1pjq(A), 1pjs(A).


 
2. Ligand: MES × 1
2-(N-Morpholino)-Ethanesulfonic acid
PDB code: 6pr2(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: PGE × 1
Triethylene glycol
PDB code: 1pjs(A).

 

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