PEAR (Phylogeny Embedding & Approximate Representation) is intended for comparison of large collections of phylogenetic trees. It calculates distances, embeds them in a lower dimensional space and plots the embeddings with a user-friendly dynamic interface. Pear is both a python software and library.

Additional information and software repository:

https://github.com/AndreaRubbi/Pear-EBI

Example analyses of tree sets produced by common phylogenetics tools:

https://github.com/AndreaRubbi/Pear-EBI/blob/pear_ebi/examples_tree_sets/Pear_EX.ipynb