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Glycerol bound form of the B12-independent glycerol dehydratase from Clostridium butyricum

Source organism: Clostridium butyricum
Biochemical function: lyase activity
Biological process: not assigned
Cellular component: cytosol

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GO terms

Biochemical function:
Biological process:
  • not assigned
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF01228
Domain description: Glycine radical
Occurring in:
  1. B12-independent glycerol dehydratase
The deposited structure of PDB entry 1r9d contains 2 copies of Pfam domain PF01228 (Glycine radical) in Glycerol dehydratase. Showing 1 copy in chain A.

PF02901
Domain description: Pyruvate formate lyase-like
Occurring in:
  1. B12-independent glycerol dehydratase
The deposited structure of PDB entry 1r9d contains 2 copies of Pfam domain PF02901 (Pyruvate formate lyase-like) in Glycerol dehydratase. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR001150
Domain description: Glycine radical domain
Occurring in:
  1. B12-independent glycerol dehydratase
IPR004184
Domain description: Pyruvate formate lyase domain
Occurring in:
  1. B12-independent glycerol dehydratase
IPR019777
Domain description: Formate C-acetyltransferase glycine radical, conserved site
Occurring in:
  1. B12-independent glycerol dehydratase
IPR010098
Domain description: Glycyl radical enzyme, PFL2/glycerol dehydratase family
Occurring in:
  1. B12-independent glycerol dehydratase

Structure domain

CATH CATH domain
3.20.70.20
Class: Alpha Beta
Architecture: Alpha-Beta Barrel
Topology: Anaerobic Ribonucleotide-triphosphate Reductase Large Chain
Homology: Anaerobic Ribonucleotide-triphosphate Reductase Large Chain
Occurring in:
  1. B12-independent glycerol dehydratase
The deposited structure of PDB entry 1r9d contains 2 copies of CATH domain 3.20.70.20 (Anaerobic Ribonucleotide-triphosphate Reductase Large Chain) in Glycerol dehydratase. Showing 1 copy in chain A.
SCOP SCOP annotation
51999
Class: Alpha and beta proteins (a/b)
Fold: PFL-like glycyl radical enzymes
Superfamily: PFL-like glycyl radical enzymes
Occurring in:
  1. B12-independent glycerol dehydratase
The deposited structure of PDB entry 1r9d contains 2 copies of SCOP domain 51999 (PFL-like) in Glycerol dehydratase. Showing 1 copy in chain A.

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