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Glycerol bound form of the B12-independent glycerol dehydratase from Clostridium butyricum

X-ray diffraction
1.8Å resolution
PDB entry 1r9d coloured by chain, front view.
PDB entry 1r9d coloured by chain, side view.
PDB entry 1r9d coloured by chain, top view.
Source organism: Clostridium butyricum
Assembly composition:
homo dimer (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: B12-independent glycerol dehydratase
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Multimeric state: homo dimer
Accessible surface area: 51939.1 Å2
Buried surface area: 2883.37 Å2
Dissociation area: 1,193.13 Å2
Dissociation energy (ΔGdiss): 3.66 kcal/mol
Dissociation entropy (TΔSdiss): 15.49 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-184502

Macromolecules

B12-independent glycerol dehydratase
Chains: A, B
Length: 787 amino acids
Theoretical weight: 88.15 KDa
Source organism: Clostridium butyricum
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8GEZ8 (Residues: 1-787; Coverage: 100%)
Gene name: dhaB1
Pfam:
InterPro:
CATH: Anaerobic Ribonucleotide-triphosphate Reductase Large Chain
SCOP: PFL-like
Glycerol dehydratase in PDB entry 1r9d, assembly 1, front view.
Glycerol dehydratase in PDB entry 1r9d, assembly 1, side view.
Glycerol dehydratase in PDB entry 1r9d, assembly 1, top view.
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