Genomes at EBI

Genomes Pages - Viroid

Please note that this page is no longer the primary point of access for assembly data. Up-to-date assembly data are searchable from https://www.ebi.ac.uk/ena/data/warehouse/search?portal=assembly. The last update to this page was in May 2015; the page has been retained as it includes organellar genomes that are not associated with nuclear genome assemblies and are not represented in the above search.

60 organisms.

Accession numbers of all the entries listed below may be downloaded as a text file for use in downloading using the Sequence Version Archive.

A more-detailed, tab-delimited list is also available.

List of available genomes (on 5-MAY-2015)

  Description Length (bp) Sequence Project Proteins
Plain HTML
Apple dimple fruit viroid
1a Apple dimple fruit viroid 306 X99487 X99487   n/a
1b Apple dimple fruit viroid isolate SDYT-1 306 KC237731 KC237731   n/a
Apple fruit crinkle viroid
2a Apple fruit crinkle viroid genomic RNA 373 AB366019 AB366019   n/a
2b Apple fruit crinkle viroid genomic RNA isolate: vir7 371 AB795270 AB795270   n/a
Apple scar skin viroid
3a Apple scar skin viroid 329 X17696 X17696   n/a
3b Apple scar skin viroid clone ASSVd-ap 330 HQ840722 HQ840722   n/a
3c Apple scar skin viroid clone ASSVd-Z7 327 JX861259 JX861259   n/a
3d Apple scar skin viroid clone Chardonnay I10V1 205 JX860405 JX860405   n/a
3e Apple scar skin viroid isolate AY10ch12 331 HQ326096 HQ326096   n/a
3f Apple scar skin viroid isolate HR174306 334 KM213397 KM213397   n/a
3g Apple scar skin viroid strain Y8 330 KC110860 KC110860   n/a
3h Apple scar skin viroid, isolate Hatkoti 330 FR749995 FR749995   n/a
4 Dapple apple viroid 331 X71599 X71599   n/a
Australian grapevine viroid
5a Australian grapevine viroid 369 DQ362908 DQ362908   n/a
5b Australian grapevine viroid isolate 6089_AGVd_Crim 370 KF007272 KF007272   n/a
5c Australian grapevine viroid isolate AG-SB-3.2 370 KJ489017 KJ489017   n/a
5d Australian grapevine viroid isolate AGVd-Bm10#2 369 JQ686701 JQ686701   n/a
5e Australian grapevine viroid isolate Kheljan 369 JN008865 JN008865   n/a
5f Australian grapevine viroid isolate shahreza 369 KF876036 KF876036   n/a
Avocado sunblotch viroid
6a Avocado sunblotch viroid 247 X13000 X13000   n/a
6b Avocado sunblotch viroid isolate Uruapan-1 249 KF562705 KF562705   n/a
Cherry small circular viroid-like RNA
7 Cherry small circular viroid-like RNA 1 isolate cscRNA1.84 415 DQ357615 DQ357615   n/a
8 Cherry small circular viroid-like RNA 2 isolate cscRNA2.82 376 DQ357622 DQ357622   n/a
Chrysanthemum chlorotic mottle viroid
9a Chrysanthemum chlorotic mottle viroid 399 Y14700 Y14700   n/a
9b Chrysanthemum chlorotic mottle viroid genomic RNA isolate: JpnCCh 399 LC017918 LC017918   n/a
9c Chrysanthemum chlorotic mottle viroid isolate H5-2 399 HQ891016 HQ891016   n/a
Chrysanthemum stunt viroid
10a Chrysanthemum stunt viroid 354 AJ000046 AJ000046   n/a
10b Chrysanthemum stunt viroid genomic RNA, isolate: P4-16 354 AB689031 AB689031   n/a
10c Chrysanthemum stunt viroid genomic RNA, strain: SK1 354 AB679193 AB679193   n/a
10d Chrysanthemum stunt viroid isolate 2214-BR 354 JX909290 JX909290   n/a
10e Chrysanthemum stunt viroid isolate AF164 355 JF938538 JF938538   n/a
10f Chrysanthemum stunt viroid isolate CSVd 37 354 JF414238 JF414238   n/a
10g Chrysanthemum stunt viroid isolate H5-2 354 HQ891019 HQ891019   n/a
10h Chrysanthemum stunt viroid isolate US1.8 354 JQ809263 JQ809263   n/a
10i Chrysanthemum stunt viroid isolate YC201110 354 KC345440 KC345440   n/a
Citrus bark cracking viroid
11a Citrus bark cracking viroid 284 X14638 X14638   n/a
11b Citrus bark cracking viroid isolate Westin 284 JN903766 JN903766   n/a
Citrus bent leaf viroid
12a Citrus bent leaf viroid 315 U21125 U21125   n/a
12b Citrus bent leaf viroid clone Hb-C1-2 328 JF742600 JF742600   n/a
12c Citrus bent leaf viroid isolate CBLVd-2 230 JQ080280 JQ080280   n/a
12d Citrus bent leaf viroid isolate lot2-2/1-5 325 KM214207 KM214207   n/a
13 Citrus viroid Ia 326 AF040721 AF040721   n/a
14 Citrus viroid-I-LSS isolate AK-4 327 KF726093 KF726093   n/a
Citrus dwarfing viroid
15a Citrus dwarfing viroid 291 JF521494 JF521494   n/a
15b Citrus dwarfing viroid clone Hb-C1-2 295 JF742602 JF742602   n/a
15c Citrus dwarfing viroid III, isolate 054-4uy 294 AY514448 AY514448   n/a
15d Citrus dwarfing viroid isolate H16-9 294 JF970265 JF970265   n/a
15e Citrus dwarfing viroid isolate lot1-1/2-19 293 KM214215 KM214215   n/a
15f Citrus dwarfing viroid isolate LS-4 293 JF812069 JF812069   n/a
16 Citrus viroid IIIb 296 AF184148 AF184148   n/a
17 Citrus viroid IIIc 291 AF184149 AF184149   n/a
Citrus exocortis viroid
18a Citrus exocortis viroid 370 AJ490825 AJ490825   n/a
18b Citrus exocortis viroid clone BO-D2E 372 KJ810543 KJ810543   n/a
18c Citrus exocortis viroid isolate 2 from kumquat 384 KJ956802 KJ956802   n/a
18d Citrus exocortis viroid isolate 159-1 371 KF973205 KF973205   n/a
18e Citrus exocortis viroid isolate ca6 374 HQ452417 HQ452417   n/a
18f Citrus exocortis viroid isolate CEVd.016 371 HQ284026 HQ284026   n/a
18g Citrus exocortis viroid isolate Exo100-12 373 JX237458 JX237458   n/a
18h Citrus exocortis viroid isolate Sj-Slo 373 HQ423166 HQ423166   n/a
18i Citrus exocortis viroid isolate sr1 370 HQ667138 HQ667138   n/a
18j Citrus exocortis viroid strain 4-25 372 KC282381 KC282381   n/a
18k Citrus exocortis viroid strain CBO-D 371 KC290927 KC290927   n/a
19 Citrus exocortis viroid (CEV-g) 369 Y00328 Y00328   n/a
20 Citrus exocortis viroid Sj 1 372 AM774356 AM774356   n/a
21 Citrus exocortis viroid Sj 2 374 AM774357 AM774357   n/a
22 Citrus exocortis Yucatan viroid 394 FJ751925 FJ751925   n/a
Citrus viroid V
23a Citrus viroid V 294 EF617306 EF617306   n/a
23b Citrus viroid V from Citrus limon 293 JQ072089 JQ072089   n/a
23c Citrus viroid V isolate JK1 294 JQ348932 JQ348932   n/a
23d Citrus viroid V isolate WN4R 294 KC460712 KC460712   n/a
Citrus viroid VI
24a Citrus viroid VI 328 AB366016 AB366016   n/a
24b Citrus viroid VI 325 LC006863 LC006863   n/a
Coconut cadang-cadang viroid
25a Coconut cadang-cadang viroid isolate CP246 246 KM588102 KM588102   n/a
25b Coconut cadang-cadang viroid isolate GOS Palm 246 HQ608513 HQ608513   n/a
25c Coconut cadang-cadang viroid isolate oil palm variant 270 270 DQ097185 DQ097185   n/a
25d Coconut cadang-cadang viroid RNA 1 fast 246 J02050 J02050   n/a
25e Coconut cadang-cadang viroid RNA 1 slow 287 J02051 J02051   n/a
Coconut tinangaja viroid
26 Coconut tinangaja viroid 254 M20731 M20731   n/a
Coleus blumei viroid 1
27a Coleus blumei viroid 1 isolate BJ-1-1 249 KC581915 KC581915   n/a
27b Coleus blumei viroid 1 RNA, isolate: Ind-1 249 AB740017 AB740017   n/a
27c Coleus blumei viroid 1 248 X52960 X52960   n/a
Coleus blumei viroid 2
28 Coleus blumei viroid 2 isolate CbVd-2-5 301 HQ727545 HQ727545   n/a
Coleus blumei viroid 3
29 Coleus blumei viroid 3 clone 3-2 362 HQ727548 HQ727548   n/a
Coleus blumei viroid 5
30 Coleus blumei viroid 5 274 FJ151370 FJ151370   n/a
Coleus blumei viroid 6
31a Coleus blumei viroid 6 343 FJ615419 FJ615419   n/a
31b Coleus blumei viroid 6 isolate BJ-6-1 340 KC581916 KC581916   n/a
Columnea latent viroid
32a Columnea latent viroid 370 X15663 X15663   n/a
32b Columnea latent viroid clone 1-6 374 JQ362419 JQ362419   n/a
32c Columnea latent viroid clone Prayong-13 366 KC143293 KC143293   n/a
32d Columnea latent viroid clone Rutgers 9 368 JF742636 JF742636   n/a
32e Columnea latent viroid isolate LP2-7c1 369 JF446924 JF446924   n/a
32f Columnea latent viroid, isolate CLVd-IT 370 HG916813 HG916813   n/a
Dahlia latent viroid
33 Dahlia latent viroid genomic RNA isolate: DLVd 342 LC036322 LC036322   n/a
Eggplant latent viroid
34 Eggplant latent viroid 335 AJ536612 AJ536612   n/a
Grapevine yellow speckle viroid 1
35a Grapevine yellow speckle viroid 1 clone 2 368 JF746171 JF746171   n/a
35b Grapevine yellow speckle viroid 1 clone 33 symptomatic 220 JX892934 JX892934   n/a
35c Grapevine yellow speckle viroid 1 clone Boonmang-1 366 KP010005 KP010005   n/a
35d Grapevine yellow speckle viroid 1 clone IUT 14 367 KF916043 KF916043   n/a
35e Grapevine yellow speckle viroid 1 genomic RNA, isolate: Kar-1 366 AB742222 AB742222   n/a
35f Grapevine yellow speckle viroid 1 isolate 09-2009-2140g1 368 HQ447058 HQ447058   n/a
35g Grapevine yellow speckle viroid 1 isolate 6356_YS1_Sy 367 KF007310 KF007310   n/a
35h Grapevine yellow speckle viroid 1 isolate Amh1#11 368 JQ686708 JQ686708   n/a
35i Grapevine yellow speckle viroid 1 isolate Cabernet Sauvignon 368 KP993474 KP993474   n/a
35j Grapevine yellow speckle viroid 1 isolate E40-YS1 367 KJ466325 KJ466325   n/a
35k Grapevine yellow speckle viroid 1 isolate GYSVd-1-WA-2 366 KC427100 KC427100   n/a
35l Grapevine yellow speckle viroid 1 isolate Mahabad 368 JN008866 JN008866   n/a
35m Grapevine yellow speckle viroid 1 isolate OR1b 368 KF137563 KF137563   n/a
35n Grapevine yellow speckle viroid 1 368 Z17225 Z17225   n/a
Grapevine yellow speckle viroid 2
36a Grapevine yellow speckle viroid 2 363 FJ597920 FJ597920   n/a
36b Grapevine yellow speckle viroid 2 clone IUT 10 361 KF916048 KF916048   n/a
36c Grapevine yellow speckle viroid 2 clone Prapatsorn 19 365 KP010023 KP010023   n/a
36d Grapevine yellow speckle viroid 2 isolate 6703_YS2_ThS2 367 KF007320 KF007320   n/a
36e Grapevine yellow speckle viroid 2 isolate GY2-RG-2.3 363 KJ489023 KJ489023   n/a
36f Grapevine yellow speckle viroid 2 isolate GYSVd-2-CF7#1 360 JQ686717 JQ686717   n/a
36g Grapevine yellow speckle viroid 2 isolate Maragheh 363 JN008867 JN008867   n/a
Hop stunt viroid
37 Citrus gummy bark viroid 299 FJ984562 FJ984562   n/a
38 Dapple peach fruit disease viroid 297 D13765 D13765   n/a
39 Dapple plum and peach fruit disease viroid 297 D13764 D13764   n/a
40 Grapevine viroid grapevine isolate 296 M35717 M35717   n/a
41a Hop stunt viroid 305 JQ080272 JQ080272   n/a
41b Hop stunt viroid clone 2 303 KF060660 KF060660   n/a
41c Hop stunt viroid clone 11R-HSVd 295 HQ386725 HQ386725   n/a
41d Hop stunt viroid clone B1B 297 Y09345 Y09345   n/a
41e Hop stunt viroid clone GH 302 KJ810552 KJ810552   n/a
41f Hop stunt viroid clone IUT 21 297 KF916039 KF916039   n/a
41g Hop stunt viroid clone Jx-C1-1 296 JF742601 JF742601   n/a
41h Hop stunt viroid clone RP8-2.2.2 299 KC137256 KC137256   n/a
41i Hop stunt viroid from lemon 302 KJ956805 KJ956805   n/a
41j Hop stunt viroid genomic RNA, isolate: Ind-1 298 AB742224 AB742224   n/a
41k Hop stunt viroid isolate 6-1 302 KJ139987 KJ139987   n/a
41l Hop stunt viroid isolate 09-2009-2140hs 297 HQ447057 HQ447057   n/a
41m Hop stunt viroid isolate 599 277 JX401927 JX401927   n/a
41n Hop stunt viroid isolate 7139_HSVd_Sy 297 KF007325 KF007325   n/a
41o Hop stunt viroid isolate Cache100-6 301 JX237456 JX237456   n/a
41p Hop stunt viroid isolate DP2 dapple 297 JQ706343 JQ706343   n/a
41q Hop stunt viroid isolate E65-HSVd 300 KJ466328 KJ466328   n/a
41r Hop stunt viroid isolate F1 302 KF712280 KF712280   n/a
41s Hop stunt viroid isolate HL3 296 JX430799 JX430799   n/a
41t Hop stunt viroid isolate HSVd-apricot-v6 296 KM052624 KM052624   n/a
41u Hop stunt viroid isolate HSVd-gb 300 JF323861 JF323861   n/a
41v Hop stunt viroid isolate HSVd-WA-1 296 KC427095 KC427095   n/a
41w Hop stunt viroid isolate HSVd_kfp 297 KM278991 KM278991   n/a
41x Hop stunt viroid isolate L8-18 302 KC878440 KC878440   n/a
41y Hop stunt viroid isolate Maragheh 297 JN008868 JN008868   n/a
41z Hop stunt viroid isolate Mor17 303 FR865478 FR865478   n/a
41A Hop stunt viroid isolate OR1c 297 KF137565 KF137565   n/a
41B Hop stunt viroid isolate pis60-ohadi 297 KC771553 KC771553   n/a
41C Hop stunt viroid strain HBO-D 302 KC290929 KC290929   n/a
41D Hop stunt viroid, clone 3593 301 HE575346 HE575346   n/a
42 Hop stunt viroid - citrus 300 AY513267 AY513267   n/a
43 Hop stunt viroid - cucumber 301 X07405 X07405   n/a
Iresine viroid 1
44a Iresine viroid 1 isolate 501-Slo 371 JQ889689 JQ889689   n/a
44b Iresine viroid 1 370 X95734 X95734   n/a
Mexican papita viroid
45a Mexican papita viroid 359 GQ131573 GQ131573   n/a
45b Mexican papita viroid isolate MX 360 KF683198 KF683198   n/a
Mulberry small circular viroid-like RNA 1
46a Mulberry small circular viroid-like RNA 1 356 EU547491 EU547491   n/a
46b Mulberry small circular viroid-like RNA 1 isolate 201110151 357 JQ809700 JQ809700   n/a
Pan troglodytes (Description)
47 Pan troglodytes troglodytes mitochondrion, isolate Grand-Maitre 16,558 JF727178 JF727178   n/a
Peach latent mosaic viroid
48a Peach latent mosaic viroid 349 DQ222098 DQ222098   n/a
48b Peach latent mosaic viroid isolate AY09PG6 clone P6 337 HQ342884 HQ342884   n/a
48c Peach latent mosaic viroid isolate PLMVd-Otago 1 337 JN680784 JN680784   n/a
48d Peach latent mosaic viroid isolate RB18 338 JF898804 JF898804   n/a
48e Peach latent mosaic viroid isolate SD1 339 JF416648 JF416648   n/a
48f Peach latent mosaic viroid isolate V206 338 JF927893 JF927893   n/a
Pear blister canker viroid
49a Pear blister canker viroid isolate PB-TT31 315 HM233937 HM233937   n/a
49b Pear blister canker viroid PBCVd 315 D12823 D12823   n/a
Pepper chat fruit viroid
50a Pepper chat fruit viroid clone Pinit-2 348 KC143301 KC143301   n/a
50b Pepper chat fruit viroid clone Supattha 11 348 JF742640 JF742640   n/a
50c Pepper chat fruit viroid isolate 3264951 348 HQ731652 HQ731652   n/a
50d Pepper chat fruit viroid isolate EMAI12/759 349 KC762953 KC762953   n/a
50e Pepper chat fruit viroid isolate Niruj-19 349 KM214225 KM214225   n/a
50f Pepper chat fruit viroid isolate NK10-6c1 349 JF446894 JF446894   n/a
50g Pepper chat fruit viroid isolate NP6-10c2 348 KJ635807 KJ635807   n/a
Persimmon viroid
51a Persimmon viroid 396 AB366022 AB366022   n/a
51b Persimmon viroid 402 LC006862 LC006862   n/a
Persimmon viroid 2
52 Persimmon viroid 2 358 AB817729 AB817729   n/a
Potato spindle tuber viroid
53a Potato spindle tuber viroid 360 DQ315388 DQ315388   n/a
53b Potato spindle tuber viroid clone EL134-1 357 KF419168 KF419168   n/a
53c Potato spindle tuber viroid clone PSTVd_68 357 KF418774 KF418774   n/a
53d Potato spindle tuber viroid genomic RNA, strain: dahlia isolate 361 AB623143 AB623143   n/a
53e Potato spindle tuber viroid isolate BRIP54757 361 KF049417 KF049417   n/a
53f Potato spindle tuber viroid isolate ce2bc 363 HQ452407 HQ452407   n/a
53g Potato spindle tuber viroid isolate CVN181 358 KJ857496 KJ857496   n/a
53h Potato spindle tuber viroid isolate DCP_1124_2013 358 KF493732 KF493732   n/a
53i Potato spindle tuber viroid isolate diascia2 360 KC810006 KC810006   n/a
53j Potato spindle tuber viroid isolate DR13-01 358 KF683200 KF683200   n/a
53k Potato spindle tuber viroid isolate Fujian 359 KM588065 KM588065   n/a
53l Potato spindle tuber viroid isolate NC12-01 360 JX280944 JX280944   n/a
53m Potato spindle tuber viroid isolate NY 360 KF683199 KF683199   n/a
53n Potato spindle tuber viroid isolate oI33_2356 360 KF021223 KF021223   n/a
53o Potato spindle tuber viroid isolate PSTVd-1 359 HQ639697 HQ639697   n/a
53p Potato spindle tuber viroid isolate U-type-jasminoides 357 HQ454917 HQ454917   n/a
53q Potato spindle tuber viroid strain Armenia-83 361 JQ889839 JQ889839   n/a
53r Potato spindle tuber viroid, clone 2904 358 HE575349 HE575349   n/a
53s Potato spindle tuber viroid, isolate Cen-1 361 FR851463 FR851463   n/a
Rice yellow mottle virus satellite
54 Rice yellow mottle virus satellite 220 AF039909 AF039909   n/a
Rubber viroid India/2009
55 Rubber viroid India/2009 361 HM107846 HM107846   n/a
Tomato apical stunt viroid
56a Tomato apical stunt viroid 363 X06390 X06390   n/a
56b Tomato apical stunt viroid clone TASVd_31 364 KF437621 KF437621   n/a
56c Tomato apical stunt viroid isolate sj10 364 HQ667141 HQ667141   n/a
56d Tomato apical stunt viroid isolate Sj 499-Slo 364 JQ904911 JQ904911   n/a
56e Tomato apical stunt viroid isolate SjH2013 364 KF484878 KF484878   n/a
56f Tomato apical stunt viroid, isolate To1-IT 364 HG916812 HG916812   n/a
57 Tomato apical stunt viroid Sj1 364 AM777161 AM777161   n/a
Tomato chlorotic dwarf viroid
58a Tomato chlorotic dwarf viroid 360 AF162131 AF162131   n/a
58b Tomato chlorotic dwarf viroid 360 JQ975098 JQ975098   n/a
58c Tomato chlorotic dwarf viroid clone 1 385 JQ974378 JQ974378   n/a
58d Tomato chlorotic dwarf viroid isolate DR13-04 360 KF683201 KF683201   n/a
58e Tomato chlorotic dwarf viroid isolate PP4-13 360 KJ817885 KJ817885   n/a
Tomato planta macho viroid
59 Tomato planta macho viroid 360 K00817 K00817   n/a
Tomato yellow dwarf disease associated satellite DNA beta-[Kochi]
60 Tomato yellow dwarf disease associated satellite DNA beta-[Kochi] 1,356 AB294512 AB294512   1 fasta UniProt

Page generated 1:07pm Tue 5-MAY-2015