Medaka Genetic Reference Panel Project

European Nucleotide Archive

The refined medaka HdrR reference sequence is available as Third Party Annotation from ENA, accessions HF933207-HF933230.

Short Read Archive

Whole genome sequencing of the 5 medaka inbred strains was submitted to DDBJ under accession DRA000588, project PRJDB927.

Whole genome sequencing of the eight medaka wild catch trios from the Kiyosu population was submitted to the European Nucleotide Archive (ENA) under accession ERP001016, project PRJEB2759.

Variations

The sequence variations identified for the four inbred lines and the Kiyosu population have been submitted to the European Variation Archive (EVA) as VCF files and will appear as "analysis" variation objects. THe data are available through ENA in the umbrella project PRJEB5472 and VCF project PRJEB5473.

Ensembl

Ensembl provides the medaka genome sequence and gene annotations

University of Tokyo Genome Browser Medaka

Access to various new data sources.

Linkage Disequilibrium

Example LD data and code from the analysis of LD in the Kiyosu population.

Variation

The VCF files are also currently available from this site.