Medaka Sequence and variation data
Reference Sequence
The medaka reference sequence used for SNP calling (in doi:10.1534/g3.113.008722) can be found under the following link:
Variations
- Inbred lines (HNI, HSOK, Kaga, Nilan) [1.1GB]
- Kioysu (wild) population (unphased SNPs) [1.2GB]
- Kioysu (wild) population (phased SNPs) [792MB]
(The variation files also contain indels which have NOT been added to the reference sequence!!!)