IHECRE00004711.5 LIVE JSON  


Type Single donor
Status Partial
Project ENCODE
Description Reference epigenome for human stomach (53 year old female)
Previous versions IHECRE00004711.4   IHECRE00004711.3   IHECRE00004711.2   IHECRE00004711.1  

Metadata


Disease ontology curie ncim:C115222
Biomaterial type Primary Tissue
Donor id ENCDO793LXB
Disease ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Donor life stage adult
Donor ethnicity NA
Donor sex Female
Donor age unit year
Tissue type stomach
Taxon id 9606
Species Homo sapiens
Disease NA
Sample ontology uri http://purl.obolibrary.org/obo/UBERON_0000945
Donor age 53
Donor health status ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Collection method unknown
Donor health status ontology curie ncim:C115222
Treatment NA
Sample ontology curie uberon:0000945
Tissue depot stomach
Donor health status NA
Biomaterial provider Kristin Ardlie, Broad Institute Genomics Platform

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
DNase-Hypersensitivity Chromatin Accessibility ENCODE ENCSR006IMH None https://www.encodeproject.org/experiments/ENCSR006IMH
ChIP-Seq Histone H3K27ac ENCODE ENCSR133NBJ None https://www.encodeproject.org/experiments/ENCSR133NBJ
ChIP-Seq Histone H3K36me3 ENCODE ENCSR166CNR None https://www.encodeproject.org/experiments/ENCSR166CNR
ChIP-Seq Transcription Factor ENCODE ENCSR185CCV None https://www.encodeproject.org/experiments/ENCSR185CCV
ATAC-seq Chromatin Accessibility ENCODE ENCSR337UIU None https://www.encodeproject.org/experiments/ENCSR337UIU
ChIP-Seq Histone H3K27me3 ENCODE ENCSR357ROS None https://www.encodeproject.org/experiments/ENCSR357ROS
ChIP-Seq Transcription Factor ENCODE ENCSR434MWV None https://www.encodeproject.org/experiments/ENCSR434MWV
ChIP-Seq ChIP-Seq Input ENCODE ENCSR488BXS None https://www.encodeproject.org/experiments/ENCSR488BXS
ChIP-Seq Histone H3K4me3 ENCODE ENCSR489ZLL None https://www.encodeproject.org/experiments/ENCSR489ZLL
ChIP-Seq ChIP-Seq Input ENCODE ENCSR493PYN None https://www.encodeproject.org/experiments/ENCSR493PYN
ChIP-Seq ChIP-Seq Input ENCODE ENCSR539HNK None https://www.encodeproject.org/experiments/ENCSR539HNK
ChIP-Seq Histone H3K9me3 ENCODE ENCSR546HZF None https://www.encodeproject.org/experiments/ENCSR546HZF
RNA-Seq total-RNA-Seq ENCODE ENCSR752UNJ None https://www.encodeproject.org/experiments/ENCSR752UNJ
ChIP-Seq Transcription Factor ENCODE ENCSR823FFR None https://www.encodeproject.org/experiments/ENCSR823FFR
ChIP-Seq Histone H3K4me1 ENCODE ENCSR903QBX None https://www.encodeproject.org/experiments/ENCSR903QBX