IHECRE00004655.5 LIVE JSON
| Type | Single donor |
| Status | Complete |
| Project | ENCODE |
| Description | Reference epigenome for human tibial nerve (53 year old female) |
| Previous versions | IHECRE00004655.4 IHECRE00004655.3 IHECRE00004655.2 IHECRE00004655.1 |
Metadata
| Disease ontology curie | ncim:C115222 |
| Biomaterial type | Primary Tissue |
| Donor id | ENCDO793LXB |
| Disease ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
| Donor life stage | adult |
| Donor ethnicity | NA |
| Donor sex | Female |
| Donor age unit | year |
| Biological replicates | NA |
| Tissue type | tibial nerve |
| Taxon id | 9606 |
| Species | Homo sapiens |
| Disease | NA |
| Sample ontology uri | http://purl.obolibrary.org/obo/UBERON_0001323 |
| Donor age | 53 |
| Donor health status ontology uri | https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222 |
| Collection method | unknown |
| Donor health status ontology curie | ncim:C115222 |
| Treatment | NA |
| Sample ontology curie | uberon:0001323 |
| Tissue depot | tibial nerve |
| Donor health status | NA |
| Biomaterial provider | Kristin Ardlie, Broad Institute Genomics Platform |
Raw data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR154SJE | None | https://www.encodeproject.org/experiments/ENCSR154SJE |
| ChIP-Seq | Histone H3K36me3 | ENCODE | ENCSR157ZVP | None | https://www.encodeproject.org/experiments/ENCSR157ZVP |
| ChIP-Seq | Histone H3K4me3 | ENCODE | ENCSR314SPW | None | https://www.encodeproject.org/experiments/ENCSR314SPW |
| ChIP-Seq | Histone H3K9me3 | ENCODE | ENCSR479GPU | None | https://www.encodeproject.org/experiments/ENCSR479GPU |
| ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR522PLW | None | https://www.encodeproject.org/experiments/ENCSR522PLW |
| ChIP-Seq | Histone H3K27me3 | ENCODE | ENCSR611YUJ | None | https://www.encodeproject.org/experiments/ENCSR611YUJ |
| Bisulfite-Seq | DNA Methylation | ENCODE | ENCSR752OCM | None | https://www.encodeproject.org/experiments/ENCSR752OCM |
| ChIP-Seq | Histone H3K27ac | ENCODE | ENCSR771YJT | None | https://www.encodeproject.org/experiments/ENCSR771YJT |
| ChIP-Seq | Histone H3K4me1 | ENCODE | ENCSR850RVA | None | https://www.encodeproject.org/experiments/ENCSR850RVA |
| RNA-Seq | total-RNA-Seq | ENCODE | ENCSR858QEL | None | https://www.encodeproject.org/experiments/ENCSR858QEL |
| ChIP-Seq | Transcription Factor | ENCODE | ENCSR875NEW | None | https://www.encodeproject.org/experiments/ENCSR875NEW |
| ChIP-Seq | Transcription Factor | ENCODE | ENCSR935XOT | None | https://www.encodeproject.org/experiments/ENCSR935XOT |