IHECRE00001853.6 LIVE JSON  


Type Single donor
Status Partial
Project ENCODE
Description Reference epigenome for human MCF-7 cell line
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Metadata


Disease ontology curie ncim:C115222
Biomaterial type Cell Line
Disease ontology uri https://nciterms.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115222
Differentiation stage unknown
Differentiation method unknown
Medium unknown
Line MCF-7
Taxon id 9606
Species Homo sapiens
Disease breast cancer (adenocarcinoma)
Sample ontology uri http://purl.obolibrary.org/obo/EFO_0001203
Sex Female
Lineage ectoderm
Treatment NA
Batch unknown
Sample ontology curie efo:0001203

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
ChIP-Seq ChIP-Seq Input ENCODE ENCSR000AHE None https://www.encodeproject.org/experiments/ENCSR000AHE
ChIP-Seq Transcription Factor ENCODE ENCSR000BTR None https://www.encodeproject.org/experiments/ENCSR000BTR
RNA-Seq mRNA-Seq ENCODE ENCSR000CPT None https://www.encodeproject.org/experiments/ENCSR000CPT
ChIP-Seq Transcription Factor ENCODE ENCSR000DMT None https://www.encodeproject.org/experiments/ENCSR000DMT
ChIP-Seq ChIP-Seq Input ENCODE ENCSR000DMW None https://www.encodeproject.org/experiments/ENCSR000DMW
DNase-Hypersensitivity Chromatin Accessibility ENCODE ENCSR000EPH None https://www.encodeproject.org/experiments/ENCSR000EPH
ChIP-Seq Histone H3K27me3 ENCODE ENCSR000EWP None https://www.encodeproject.org/experiments/ENCSR000EWP
ChIP-Seq ChIP-Seq Input ENCODE ENCSR000EWW None https://www.encodeproject.org/experiments/ENCSR000EWW
miRNA-Seq smRNA-Seq ENCODE ENCSR343HIX None https://www.encodeproject.org/experiments/ENCSR343HIX
ATAC-seq Chromatin Accessibility ENCODE ENCSR422SUG None https://www.encodeproject.org/experiments/ENCSR422SUG
ChIP-Seq Histone H3K4me1 ENCODE ENCSR493NBY None https://www.encodeproject.org/experiments/ENCSR493NBY
ChIP-Seq Transcription Factor ENCODE ENCSR560BUE None https://www.encodeproject.org/experiments/ENCSR560BUE
ChIP-Seq Histone H3K36me3 ENCODE ENCSR610IYQ None https://www.encodeproject.org/experiments/ENCSR610IYQ
ChIP-Seq Histone H3K27ac ENCODE ENCSR752UOD None https://www.encodeproject.org/experiments/ENCSR752UOD
ChIP-Seq ChIP-Seq Input ENCODE ENCSR768LHG None https://www.encodeproject.org/experiments/ENCSR768LHG
ChIP-Seq Histone H3K4me3 ENCODE ENCSR985MIB None https://www.encodeproject.org/experiments/ENCSR985MIB
ChIP-Seq Histone H3K9me3 ENCODE ENCSR999WHE None https://www.encodeproject.org/experiments/ENCSR999WHE
RNA-Seq total-RNA-Seq ENCODE ENCSR355JZC None https://www.encodeproject.org/experiments/ENCSR355JZC