Ligand clusters for UniProt code Q9UKV8

Ligand clusters for Q9UKV8: Protein argonaute-2 from Homo sapiens

		Top 6 (of 19) ligand clusters Cluster 1. 11 ligand types 13 ligands Cluster 2. 2 ligand types 22 ligands Cluster 3. 2 ligand types 23 ligands Cluster 4. 2 ligand types 10 ligands Cluster 5. 2 ligand types 2 ligands Cluster 6. 1 ligand type 11 ligands
Representative protein: 4w5tA

Structures

PDB		Schematic diagram
4w5tA
4z4dA
4w5oA
4z4cA
4z4eA
		more ...

Cluster 1 contains 11 ligand types

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Ligand		Description
		1. Ligand: IPA × 2 isopropyl alcohol Isopropyl alcohol PDB codes: 4z4d(A), 6cbd(A).
		2. Ligand: PO4 × 2 Phosphate ion PDB codes: 3luc(A), 3luk(A).
		3. Ligand: 5GP × 1 Guanosine-5'-Monophosphate PDB code: 3luh(A).
		4. Ligand: 6OP-F2T-6NW-UFT-6OO-UFT × 1 6OP=1-[(5e)-5,6-Dideoxy-2-O-(2-Methoxyethyl)-6-Phosphono- Beta-D-Ribo-Hex-5-Enofuranosyl]-5- Methylpyrimidine-2, 4(1h,3h)-Dione, F2T=2'-Deoxy-2'-Fluoro-5'-O-Thiophosphonouridine, 6NW=2'-O-Methyl-5'-O-Thiophosphonoadenosine, UFT=2'-Deoxy-2'-Fluorouridine 5'-(Dihydrogen phosphate), 6OO=2'-O-Methyl-5'-O-Thiophosphonocytidine. PDB code: 5js2(A).
		5. Ligand: 8BR × 1 8-Bromo-Adenosine-5'-Monophosphate PDB code: 7d7u(A).
		6. Ligand: AMP × 1 Adenosine monophosphate PDB code: 3lud(A).
		7. Ligand: ATP × 1 Adenosine-5'-Triphosphate PDB code: 3qx9(A).
		8. Ligand: C5P × 1 Cytidine-5'-Monophosphate PDB code: 3lug(A).
		9. Ligand: GTG × 1 7-Methyl-Guanosine-5'-Triphosphate-5'-Guanosine PDB code: 3qx8(A).
		10. Ligand: K2R × 1 3-[3-[9-[(2r,3r,4s,5r)-3,4-Bis(oxidanyl)-5- (Phosphonooxymethyl)oxolan-2-Yl]purin-6- Yl]phenyl]propanoic acid PDB code: 7c6b(A).
		11. Ligand: U5P × 1 Uridine-5'-Monophosphate PDB code: 3luj(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: IPH × 20 phenol Phenol PDB codes: 4f3t(A), 4w5n(A), 4w5o(A), 4w5q(A), 4w5r(A), 4w5t(A), 4z4c(A), 4z4d(A), 4z4e(A), 4z4f(A), 4z4g(A), 4z4h(A), 4z4i(A), 5js1(A), 5js2(A), 5ki6(A), 5t7b(A), 6mdz(A), 6mfn(A), 6mfr(A).
		2. Ligand: TRP × 2 PDB codes: 4olb(A), 6cbd(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: IPH × 21 phenol Phenol PDB codes: 4f3t(A), 4ola(A), 4w5n(A), 4w5o(A), 4w5q(A), 4w5r(A), 4w5t(A), 4z4c(A), 4z4d(A), 4z4e(A), 4z4f(A), 4z4g(A), 4z4h(A), 4z4i(A), 5js1(A), 5js2(A), 5ki6(A), 5t7b(A), 5wea(A), 6mdz(A), 6mfr(A).
		2. Ligand: TRP × 2 PDB codes: 4olb(A), 6cbd(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: IPH × 9 phenol Phenol PDB codes: 4w5o(A), 4w5q(A), 4w5t(A), 4z4c(A), 4z4d(A), 4z4e(A), 4z4g(A), 4z4h(A), 5ki6(A).
		2. Ligand: TRP × 1 PDB code: 6cbd(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: IPA × 1 isopropyl alcohol Isopropyl alcohol PDB code: 4z4d(A).
		2. Ligand: IPH × 1 phenol Phenol PDB code: 4w5n(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: IPH × 11 phenol Phenol PDB codes: 4w5o(A), 4w5q(A), 4w5r(A), 4w5t(A), 4z4c(A), 4z4d(A), 4z4e(A), 4z4f(A), 4z4g(A), 4z4h(A), 4z4i(A).