Ligand clusters for UniProt code Q8RQE9

Ligand clusters for Q8RQE9: DNA-directed RNA polymerase subunit beta from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

		Top 6 (of 123) ligand clusters Cluster 1. 26 ligand types 55 ligands Cluster 2. 2 ligand types 3 ligands Cluster 3. 1 ligand type 3 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 1iw7C

Structures

PDB		Schematic diagram
1iw7C
2be5C
1smyC
2o5jC
2a6hC
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Cluster 1 contains 26 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
_Mg		1. Metal: _MG × 9 PDB codes: 1smy(C), 2a68(C), 2a69(C), 2be5(C), 5x21(C).
		2. Ligand: RBT × 1 rifabutin Rifabutin PDB code: 2a68(C).
		3. Ligand: RFV × 1 rifamycin Rifamycin sv PDB code: 4oir(C).
		4. Ligand: RPT × 1 rifapentine Rifapentine PDB code: 2a69(C).
		5. Ligand: G4P × 1 Guanosine-5',3'-Tetraphosphate PDB code: 1smy(C).
		6. Ligand: APC × 2 Diphosphomethylphosphonic acid adenosyl ester PDB codes: 2o5j(C), 2ppb(C).
		7. Ligand: TGT × 1 Tagetitoxin PDB code: 2be5(C).
		8. Ligand: 2RA-DSN-DVA-R2T-2TL-0QZ-FGL × 5 2RA=3-Amino-D-Alanine, DSN=D-Serine, DVA=D-Valine, R2T=Beta,Gamma-Dihydroxyglutamine, 2TL=D-Allothreonine, 0QZ=D-Isoserine, FGL=2-Aminopropanedioic acid. PDB codes: 4mq9(C), 4oin(C), 4oip(C), 4oiq(C), 4oir(C).
		9. Ligand: ATP × 5 Adenosine-5'-Triphosphate PDB codes: 4oio(C), 4oip(C), 4q4z(C), 4q5s(C), 5d4c(C).
		10. Ligand: POP × 5 Pyrophosphate 2- PDB codes: 5vo8(C), 6ovr(C), 6ovy(C), 6ow3(C), 6oy7(C).
		11. Ligand: 2TM × 3 5'-O-[(S)-Hydroxy{[(s)-Hydroxy(phosphonooxy) phosphoryl]methyl}phosphoryl]cytidine PDB codes: 4oio(C), 4q4z(C), 5x22(C).
		12. Ligand: __C × 3 PDB codes: 5d4c(C), 5d4d(C), 5d4e(C).
		13. Ligand: __G-__A × 3 PDB codes: 4g7o(C), 5x21(C), 5x22(C).
		14. Ligand: CTP × 2 Cytidine-5'-Triphosphate PDB codes: 5d4c(C), 5d4d(C).
		15. Ligand: G4P × 1 Guanosine-5',3'-Tetraphosphate PDB code: 5tmc(C).
		16. Ligand: GTP × 2 Guanosine-5'-Triphosphate PDB codes: 6oy5(C), 6oy6(C).
		17. Ligand: CH1 × 1 3'-Deoxy-Cytidine-5'-Triphosphate PDB code: 6woy(C).
		18. Ligand: COD × 1 Dephospho coenzyme a PDB code: 5d4e(C).
		19. Ligand: DCP × 1 2'-Deoxycytidine-5'-Triphosphate PDB code: 6wox(C).
		20. Ligand: DPO × 1 Diphosphate PDB code: 5d4e(C).
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Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: NE6 × 2 Methyl [(1e,5r)-5-{(3s)-3-[(2e,4e)-2,5-Dimethylocta-2, 4-Dienoyl]-2,4-Dioxo-3,4-Dihydro-2h-Pyran-6- Yl}hexylidene]carbamate PDB codes: 3dxj(C), 5tmf(C).
		2. Ligand: MXP × 1 Myxopyronin b PDB code: 3eql(C).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: STD × 3 Streptolydigin PDB codes: 1zyr(C), 2a6h(C), 2ppb(C).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 3dxj(C).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 3dxj(C).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 3dxj(C).