Ligand clusters for UniProt code P52026

Ligand clusters for P52026: DNA polymerase I from Geobacillus stearothermophilus

		Top 6 (of 14) ligand clusters Cluster 1. 9 ligand types 42 ligands Cluster 2. 2 ligand types 2 ligands Cluster 3. 1 ligand type 25 ligands Cluster 4. 1 ligand type 10 ligands Cluster 5. 1 ligand type 5 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 1l3sA

Structures

PDB		Schematic diagram
1l3sA
1l3uA
1njyA
3eyzA
1nkcA
		more ...

Cluster 1 contains 9 ligand types

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Ligand		Description
		1. Ligand: DCP × 1 2'-Deoxycytidine-5'-Triphosphate PDB code: 1lv5(A).
		2. Ligand: TTP × 1 Thymidine-5'-Triphosphate PDB code: 1njy(A).
_Mg		3. Metal: _MG × 3 PDB codes: 1lv5(A), 2bdp(A), 4bdp(A).
_Zn		4. Metal: _ZN × 2 PDB codes: 3ez5(A),
_Mn		5. Metal: _MN × 1 PDB code: 1lv5(A).
		6. Ligand: BAP × 1 1,2,3-Trihydroxy-1,2,3,4-Tetrahydrobenzo[a]pyrene PDB code: 1xc9(A).
		7. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 1nk0(A).
		8. Ligand: SO4 × 31 Sulfate ion PDB codes: 1l3s(A), 1l3t(A), 1l3u(A), 1l3v(A), 1l5u(A), 1njx(A), 1njz(A), 1nk0(A), 1nk4(A), 1nk5(A), 1nk6(A), 1nk7(A), 1nk8(A), 1nk9(A), 1nkb(A), 1nkc(A), 1nke(A), 1u45(A), 1u47(A), 1u48(A), 1u49(A), 1u4b(A), 1ua1(A), 1xc9(A), 2bdp(A), 3bdp(A), 3eyz(A), 4bdp(A).
		9. Ligand: DAD × 1 2',3'-Dideoxyadenosine-5'-Triphosphate PDB code: 3ez5(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: DCP × 1 2'-Deoxycytidine-5'-Triphosphate PDB code: 1nke(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 1lv5(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: GLC-FRU × 25 GLC=Alpha-D-Glucopyranose, FRU=Beta-D-Fructofuranose. PDB codes: 1l3s(A), 1l3t(A), 1l3u(A), 1l3v(A), 1l5u(A), 1njx(A), 1njy(A), 1njz(A), 1nk4(A), 1nk5(A), 1nk6(A), 1nk7(A), 1nk8(A), 1nk9(A), 1nkb(A), 1nkc(A), 1nke(A), 1u45(A), 1u47(A), 1u48(A), 1u49(A), 1u4b(A), 1xc9(A), 3eyz(A), 3ez5(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GLC-FRU × 10 GLC=Alpha-D-Glucopyranose, FRU=Beta-D-Fructofuranose. PDB codes: 1l3s(A), 1l3u(A), 1l3v(A), 1l5u(A), 1njx(A), 1njy(A), 1nk6(A), 1nk7(A), 1nk8(A), 1nk9(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GLC-FRU × 5 GLC=Alpha-D-Glucopyranose, FRU=Beta-D-Fructofuranose. PDB codes: 1njx(A), 1nk0(A), 1nk8(A), 1nkb(A), 1nke(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: _AF × 1 2-Aminofluorene PDB code: 1ua1(A).