spacer
spacer
EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code P43379

Ligand clusters for P43379: Cyclomaltodextrin glucanotransferase from Bacillus circulans

Top 6 (of 17) ligand clusters
Cluster 1.
15 ligand types
27 ligands
 Cluster 2.
9 ligand types
23 ligands
 Cluster 3.
8 ligand types
23 ligands
 Cluster 4.
3 ligand types
23 ligands
 Cluster 5.
1 ligand type
3 ligands
 Cluster 6.
2 ligand types
3 ligands
Representative protein: 1cdgA  
JSmol
 

Structures

PDB   Schematic diagram
1cdgA    
1d3cA    
1cxlA    
1cxeA    
1pezA    
 more ...

 

 Cluster 1 contains 15 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: GLC-G6D × 4
GLC=Alpha-D-Glucopyranose, G6D=Alpha-D-Quinovopyranose.
PDB codes: 1dtu(A), 1kck(A), 2cxg(A), 2dij(A).


 
2. Ligand: BGC-GLC-GLC-GLC-GLC-GLC-GLC × 3
BGC=Beta-D-Glucopyranose, GLC=Alpha-D-Glucopyranose.
PDB codes: 1eo5(A), 1ot1(A), 1ot2(A).


 
3. Ligand: GLC-GLC-GLC-GLC × 3
GLC=Alpha-D-Glucopyranose.
PDB codes: 1cxe(A), 1cxf(A), 1cxh(A).


 
4. Ligand: MPD × 3
(4s)-2-Methyl-2,4-Pentanediol
PDB codes: 1eo5(A), 1ot1(A), 1ot2(A).


 
5. Ligand: ADH × 2
1-Amino-2,3-Dihydroxy-5-Hydroxymethyl cyclohex-5-Ene
PDB codes: 1dtu(A), 2dij(A).


 
6. Ligand: GLC-GLC × 2
GLC=Alpha-D-Glucopyranose.
PDB codes: 1pj9(A),


 
7. Ligand: GLC-GLC-GLC-GLC-GLC-GLC × 2
GLC=Alpha-D-Glucopyranose.
PDB codes: 1eo7(A), 2dij(A).


 
8. Ligand: ACI-GLC × 1
GLC=Alpha-D-Glucopyranose, ACI=6-Amino-4-Hydroxymethyl-Cyclohex-4-Ene-1,2,3-Triol.
PDB code: 2cxg(A).


 
9. Ligand: ADH-GLC × 1
GLC=Alpha-D-Glucopyranose, ADH=1-Amino-2,3-Dihydroxy-5-Hydroxymethyl cyclohex-5-Ene.
PDB code: 1kck(A).


 
10. Ligand: BGC-GLC × 1
BGC=Beta-D-Glucopyranose, GLC=Alpha-D-Glucopyranose.
PDB code: 1pez(A).


 
11. Ligand: GLC-GLC-G4D × 1
GLC=Alpha-D-Glucopyranose, G4D=4-Deoxy-Alpha-D-Glucopyranose.
PDB code: 1cxl(A).


 
12. Ligand: GLC-GLC-GLC × 1
GLC=Alpha-D-Glucopyranose.
PDB code: 1dtu(A).


 
13. Ligand: GLC-GLC-GLC-BGC × 1
GLC=Alpha-D-Glucopyranose, BGC=Beta-D-Glucopyranose.
PDB code: 1kcl(A).


 
14. Ligand: GLC-GLC-GLC-GLC-GLC-GLC-GLC-GLC × 1
GLC=Alpha-D-Glucopyranose.
PDB code: 1d3c(A).


 
15. Ligand: GLC-GLC-GLC-GLC-GLC-GLC-GLC-GLC-GLC × 1
GLC=Alpha-D-Glucopyranose.
PDB code: 1cxk(A).

 

 Cluster 2 contains 9 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: GLC-GLC × 11
GLC=Alpha-D-Glucopyranose.
PDB codes: 1cdg(A), 1cgv(A), 1cgw(A), 1cgx(A), 1cgy(A), 1cxe(A), 1cxh(A), 1cxi(A), 1kcl(A), 1pez(A), 2cxg(A).


 
2. Ligand: GLC-GLC-GLC-GLC × 3
GLC=Alpha-D-Glucopyranose.
PDB codes: 1cxk(A), 1eo5(A), 1eo7(A).


 
3. Ligand: BGC-GLC-GLC-GLC × 2
BGC=Beta-D-Glucopyranose, GLC=Alpha-D-Glucopyranose.
PDB codes: 1ot1(A), 1ot2(A).


 
4. Ligand: GLC-GLC-GLC × 2
GLC=Alpha-D-Glucopyranose.
PDB codes: 1kck(A), 1pj9(A).


 
5. Ligand: BGC-GLC-GLC-GLC-GLC × 1
GLC=Alpha-D-Glucopyranose, BGC=Beta-D-Glucopyranose.
PDB code: 1dtu(A).


 
6. Ligand: GLC-G4D × 1
GLC=Alpha-D-Glucopyranose, G4D=4-Deoxy-Alpha-D-Glucopyranose.
PDB code: 1cxl(A).


 
7. Ligand: GLC-GLC-GLC-GLC-GLC × 1
GLC=Alpha-D-Glucopyranose.
PDB code: 2dij(A).


 
8. Ligand: GLC-GLC-GLC-GLC-GLC-GLC × 1
GLC=Alpha-D-Glucopyranose.
PDB code: 1cxf(A).


 
9. Ligand: GLC-GLC-GLC-GLC-GLC-GLC-GLC-GLC × 1
GLC=Alpha-D-Glucopyranose.
PDB code: 1d3c(A).

 

 Cluster 3 contains 8 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: GLC-GLC × 8
GLC=Alpha-D-Glucopyranose.
PDB codes: 1cdg(A), 1cgv(A), 1cgw(A), 1cgx(A), 1cgy(A), 1cxe(A), 1cxh(A), 1cxi(A).


 
2. Ligand: GLC-GLC-GLC × 5
GLC=Alpha-D-Glucopyranose.
PDB codes: 1dtu(A), 1eo7(A), 1pez(A), 1pj9(A), 2dij(A).


 
3. Ligand: GLC-GLC-GLC-GLC × 3
GLC=Alpha-D-Glucopyranose.
PDB codes: 1cxk(A), 1eo5(A), 2cxg(A).


 
4. Ligand: BGC-GLC-GLC × 2
GLC=Alpha-D-Glucopyranose, BGC=Beta-D-Glucopyranose.
PDB codes: 1kck(A), 1kcl(A).


 
5. Ligand: BGC-GLC-GLC-GLC × 2
BGC=Beta-D-Glucopyranose, GLC=Alpha-D-Glucopyranose.
PDB codes: 1ot1(A), 1ot2(A).


 
6. Ligand: GLC-GLC-GLC-GLC-GLC-GLC × 1
GLC=Alpha-D-Glucopyranose.
PDB code: 1cxf(A).


 
7. Ligand: GLC-GLC-GLC-GLC-GLC-GLC-GLC-GLC × 1
GLC=Alpha-D-Glucopyranose.
PDB code: 1d3c(A).


 
8. Ligand: GLF-GLC-G4D × 1
GLC=Alpha-D-Glucopyranose, G4D=4-Deoxy-Alpha-D-Glucopyranose, GLF=Alpha-D-Glucopyranosyl fluoride.
PDB code: 1cxl(A).

 

 Cluster 4 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: GLC-GLC × 20
GLC=Alpha-D-Glucopyranose.
PDB codes: 1cdg(A), 1cgv(A), 1cgw(A), 1cgx(A), 1cgy(A), 1cxe(A), 1cxf(A), 1cxh(A), 1cxi(A), 1cxk(A), 1d3c(A), 1dtu(A), 1kck(A), 1kcl(A), 1ot1(A), 1ot2(A), 1pez(A), 1pj9(A), 2cxg(A), 2dij(A).


 
2. Ligand: GLC-GLC-GLC × 2
GLC=Alpha-D-Glucopyranose.
PDB codes: 1eo5(A), 1eo7(A).


 
3. Ligand: GLF-GLC-G4D × 1
GLC=Alpha-D-Glucopyranose, G4D=4-Deoxy-Alpha-D-Glucopyranose, GLF=Alpha-D-Glucopyranosyl fluoride.
PDB code: 1cxl(A).

 

 Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: EPE × 3
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB codes: 1ot1(A), 1ot2(A), 1pez(A).

 

 Cluster 6 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: ACY × 2
acetic acid
Acetic acid
PDB codes: 1pez(A), 1pj9(A).


 
2. Ligand: MPD × 1
(4s)-2-Methyl-2,4-Pentanediol
PDB code: 1d3c(A).

 

spacer
spacer