Ligand clusters for UniProt code P27695

Ligand clusters for P27695: DNA-(apurinic or apyrimidinic site) endonuclease from Homo sapiens

		Top 6 (of 31) ligand clusters Cluster 1. 12 ligand types 32 ligands Cluster 2. 2 ligand types 11 ligands Cluster 3. 3 ligand types 5 ligands Cluster 4. 2 ligand types 4 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 6mkkA

Structures

PDB		Schematic diagram
6mkkA
5wn2A
6p94A
6w3lA
6mkoA
		more ...

Cluster 1 contains 12 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 9 PDB codes: 2isi(A), 3u8u(A), 4iem(A), 4lnd(A), 4qhe(A), 5cfg(A), 5dff(A), 5dfh(A), 6mkk(A).
_Mn		2. Metal: _MN × 5 PDB codes: 1de9(A), 4qh9(A), 5dg0(A), 5wn5(A), 6w4i(A).
		3. Ligand: DMS × 3 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 6mk3(A), 6mkk(A), 6mkm(A).
		4. Ligand: GOL × 1 glycerin Glycerol PDB code: 6mko(A).
		5. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 6mkm(A).
		6. Ligand: EDO × 3 1,2-Ethanediol PDB codes: 4qhd(A), 5dfi(A), 5dg0(A).
_Cl		7. Metal: _CL × 3 PDB codes: 3u8u(A), 5dfj(A), 6bor(A).
_Pb		8. Metal: _PB × 3 PDB codes: 1e9n(A), 1hd7(A).
		9. Ligand: ACT × 1 Acetate ion PDB code: 2o3h(A).
		10. Ligand: PGA × 1 2-Phosphoglycolic acid PDB code: 5wn2(A).
		11. Ligand: PO4 × 1 Phosphate ion PDB code: 2isi(A).
_Sm		12. Metal: _SM × 1 PDB code: 2o3h(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 7 1,2-Ethanediol PDB codes: 4qhe(A), 5dfi(A), 5dfj(A), 5dg0(A), 6boq(A), 6bor(A).
		2. Ligand: PEG × 4 Di(hydroxyethyl)ether PDB codes: 5dff(A), 6p93(A), 6p94(A), 6w0q(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: DMS × 2 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 6mk3(A), 6mkm(A).
_Cl		2. Metal: _CL × 2 PDB codes: 5wn3(A), 5wn4(A).
		3. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4qh9(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: PEG × 3 Di(hydroxyethyl)ether PDB codes: 5dff(A), 6bov(A), 6w43(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6mkm(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6mko(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: ACT × 1 Acetate ion PDB code: 2o3h(A).