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Ligand clusters for UniProt code P22259

Ligand clusters for P22259: Phosphoenolpyruvate carboxykinase (ATP) from Escherichia coli (strain K12)

6 ligand clusters
Cluster 1.
13 ligand types
55 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1os1A  
JSmol
 

Structures

PDB   Schematic diagram
1os1A    
2py7X    
6v2lA    
1aylA    
6crtA    
 more ...

 

 Cluster 1 contains 13 ligand types

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Ligand Description


 
1. Ligand: ATP × 5
Adenosine-5'-Triphosphate
PDB codes: 1aq2(A), 1ayl(A), 1os1(A), 2olq(A), 2olr(A).

_Mn
 
2. Metal: _MN × 11
PDB codes: 1aq2(A), 2olq(A), 2pxz(X), 2py7(X), 6asi(A), 6asm(A), 6at2(A), 6crt(A), 6v2l(A),

_Mg
 
3. Metal: _MG × 10
PDB codes: 1k3c(A), 1k3d(A), 1os1(A), 2olq(A), 2olr(A), 2pxz(X), 2py7(X), 6asi(A), 6asm(A), 6at2(A).


 
4. Ligand: PYR × 4
pyruvic acid
Pyruvic acid
PDB codes: 1aq2(A), 1k3c(A), 1os1(A), 6com(A).


 
5. Ligand: OXL × 1
Oxalate ion
PDB code: 1ayl(A).


 
6. Ligand: ATP × 9
Adenosine-5'-Triphosphate
PDB codes: 2pxz(X), 2py7(X), 6asi(A), 6asm(A), 6at2(A), 6com(A), 6crt(A), 6v2l(A), 6v2m(A).


 
7. Ligand: THJ × 5
Thiosulfate
PDB codes: 6asm(A), 6at2(A), 6at3(A), 6at4(A),


 
8. Ligand: 03S × 2
Methanesulfonic acid
PDB codes: 6asi(A), 6asn(A).


 
9. Ligand: ACT × 2
Acetate ion
PDB codes: 6v2l(A), 6v2n(A).


 
10. Ligand: ADP-AF3 × 2
ADP=Adenosine-5'-Diphosphate, AF3=Aluminum fluoride.
PDB codes: 1k3c(A), 1k3d(A).


 
11. Ligand: OAA × 2
Oxaloacetate ion
PDB codes: 2pxz(X), 6at3(A).


 
12. Ligand: SO4 × 1
Sulfate ion
PDB code: 6asn(A).

_Ca
 
13. Metal: _CA × 1
PDB code: 1os1(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: TRS × 1
tromethamine
2-Amino-2-Hydroxymethyl-Propane-1,3-Diol
PDB code: 6at2(A).


 
2. Ligand: BTB × 1
2-[Bis-(2-Hydroxy-Ethyl)-Amino]-2-Hydroxymethyl- Propane-1,3-Diol
PDB code: 6asm(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 6asn(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 6asn(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: THJ × 1
Thiosulfate
PDB code: 6at4(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Mn
 
1. Metal: _MN × 1
PDB code: 2py7(X).

 

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