Ligand clusters for UniProt code P09838

Ligand clusters for P09838: DNA nucleotidylexotransferase OS=Mus musculus OX=10090 GN=Dntt PE=1 SV=4

		Top 6 (of 14) ligand clusters Cluster 1. 18 ligand types 124 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 1 ligand type 1 ligand Cluster 4. 2 ligand types 3 ligands Cluster 5. 1 ligand type 2 ligands Cluster 6. 1 ligand type 2 ligands
Representative protein: 4i27A

Structures

PDB		Schematic diagram
4i27A
4qzhA
4qzeA
4qzdA
4qzcA
		more ...

Cluster 1 contains 18 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 38 PDB codes: 1jms(A), 1kdh(A), 4i27(A), 4i28(A), 4i2a(A), 4i2b(A), 4i2d(A), 4i2f(A), 4i2g(A), 4i2h(A), 4i2i(A), 4qz8(A), 4qz9(A), 4qza(A), 4qzb(A), 4qzc(A), 4qzd(A), 4qze(A), 4qzf(A), 4qzg(A), 4qzh(A), 4qzi(A), 5d46(A), 5d49(A), 5d4b(A), 6go4(A), 6go5(A), 6go6(A), 6go7(A).
_Mn		2. Metal: _MN × 4 PDB codes: 4i29(A), 4i2c(A),
		3. Ligand: DAD × 1 2',3'-Dideoxyadenosine-5'-Triphosphate PDB code: 1kej(A).
_Na		4. Metal: _NA × 35 PDB codes: 1jms(A), 1kdh(A), 1kej(A), 4i27(A), 4i28(A), 4i29(A), 4i2a(A), 4i2b(A), 4i2c(A), 4i2d(A), 4i2e(A), 4i2f(A), 4i2g(A), 4i2h(A), 4iqu(A), 4iqv(A), 4iqw(A), 4qz8(A), 4qz9(A), 4qza(A), 4qzb(A), 4qzc(A), 4qzd(A), 4qze(A), 4qzf(A), 4qzg(A), 4qzh(A), 4qzi(A), 5d46(A), 5d49(A), 5d4b(A), 6go4(A), 6go5(A), 6go6(A), 6go7(A).
		5. Ligand: DCT × 14 2',3'-Dideoxycytidine 5'-Triphosphate PDB codes: 4qz8(A), 4qz9(A), 4qza(A), 4qzb(A), 4qzc(A), 4qzd(A), 4qze(A), 4qzf(A), 4qzg(A), 4qzh(A), 4qzi(A), 6go4(A), 6go6(A), 6go7(A).
_Zn		6. Metal: _ZN × 8 PDB codes: 4i28(A), 4i2d(A), 4i2f(A), 4i2h(A), 4i2i(A), 4i2j(A), 4qzi(A).
		7. Ligand: APC × 5 Diphosphomethylphosphonic acid adenosyl ester PDB codes: 4i2b(A), 4i2c(A), 4i2d(A), 4i2e(A), 4i2h(A).
_Co		8. Metal: _CO × 5 PDB codes: 1kej(A), 4i2e(A), 4i2g(A).
		9. Ligand: 1FO × 2 6-[4-(3-Fluorobenzoyl)-1h-Pyrrol-2-Yl]-2-Hydroxy-4- Oxohexa-2,5-Dienoic acid PDB codes: 4iqt(A), 4iqv(A).
		10. Ligand: 1FQ × 2 (2z,5e)-6-[4-(4-Fluorobenzoyl)-1h-Pyrrol-2-Yl]-2- Hydroxy-4-Oxohexa-2,5-Dienoic acid PDB codes: 4iqu(A), 4iqw(A).
		11. Ligand: SO4 × 2 Sulfate ion PDB codes: 5d49(A), 5d4b(A).
		12. Ligand: _DA-_DA × 2 PDB codes: 4i2b(A), 4i2h(A).
		13. Ligand: AP5 × 1 Bis(adenosine)-5'-Pentaphosphate PDB code: 4i2i(A).
		14. Ligand: BRU-BRU-BRU-BRU × 1 BRU=5-Bromo-2'-Deoxyuridine-5'-Monophosphate. PDB code: 1kdh(A).
		15. Ligand: D3T × 1 2',3'-Dideoxy-Thymidine-5'-Triphosphate PDB code: 4i27(A).
		16. Ligand: DCP × 1 2'-Deoxycytidine-5'-Triphosphate PDB code: 4i2j(A).
		17. Ligand: POP × 1 Pyrophosphate 2- PDB code: 5d46(A).
		18. Ligand: XC5 × 1 2'-Deoxy-5'-O-[(S)-Hydroxy{[(s)-Hydroxy(phosphonooxy) phosphoryl]methyl}phosphoryl]cytidine PDB code: 6go5(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: DCT × 1 2',3'-Dideoxycytidine 5'-Triphosphate PDB code: 4qza(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 5d49(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: ACT × 2 Acetate ion PDB codes: 5d46(A), 5d49(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 5d4b(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 2 Sulfate ion PDB codes: 5d46(A), 5d49(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 2 Sulfate ion PDB codes: 5d46(A), 5d4b(A).