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Ligand clusters for UniProt code P06968

Ligand clusters for P06968: Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Escherichia coli (strain K12) OX=83333 GN=dut PE=1 SV=2

Top 6 (of 8) ligand clusters
Cluster 1.
6 ligand types
13 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
4 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6hdeA  
JSmol
 

Structures

PDB   Schematic diagram
6hdeA    
1eu5A    
1dudA    
2hrmA    
1sehA    
 more ...

 

 Cluster 1 contains 6 ligand types

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Ligand Description


 
1. Ligand: DUT × 1
Deoxyuridine-5'-Triphosphate
PDB code: 1syl(A).


 
2. Ligand: UMP × 1
2'-Deoxyuridine 5'-Monophosphate
PDB code: 1seh(A).


 
3. Ligand: GOL × 4
glycerin
Glycerol
PDB codes: 1eu5(A), 1euw(A),


 
4. Ligand: DUD × 2
Deoxyuridine-5'-Diphosphate
PDB codes: 1dud(A), 2hr6(A).


 
5. Ligand: UC5 × 1
2'-Deoxy-5'-O-[(S)-Hydroxy(phosphonomethyl) phosphoryl]uridine
PDB code: 2hrm(A).


 
6. Ligand: DUP × 4
2'-Deoxyuridine 5'-Alpha,Beta-Imido-Triphosphate
PDB codes: 1rn8(A), 1rnj(A), 6hde(A),

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: DUP × 2
2'-Deoxyuridine 5'-Alpha,Beta-Imido-Triphosphate
PDB codes: 6hde(A),

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: DUP × 1
2'-Deoxyuridine 5'-Alpha,Beta-Imido-Triphosphate
PDB code: 6hde(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: ACT × 1
Acetate ion
PDB code: 1rn8(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: TRS × 4
tromethamine
2-Amino-2-Hydroxymethyl-Propane-1,3-Diol
PDB codes: 1rn8(A), 1rnj(A), 1seh(A), 1syl(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: TRS × 1
tromethamine
2-Amino-2-Hydroxymethyl-Propane-1,3-Diol
PDB code: 1rnj(A).

 

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