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PDBsum entry 1a8b
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Calcium binding protein
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PDB id
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1a8b
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Contents |
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* Residue conservation analysis
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Nat Struct Biol
2:968-974
(1995)
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PubMed id:
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Ca(2+)-bridging mechanism and phospholipid head group recognition in the membrane-binding protein annexin V.
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M.A.Swairjo,
N.O.Concha,
M.A.Kaetzel,
J.R.Dedman,
B.A.Seaton.
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ABSTRACT
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Structural evidence is presented for a 'Ca(2+)-bridging' mechanism, proposed for
Ca(2+)-binding interfacial membrane proteins such as annexins, protein kinase C,
and certain coagulation proteins. Crystal structures of Ca(2+)-annexin V
complexes with phospholipid polar heads provide molecular details of
'Ca(2+)-bridges' as key features in the membrane attachment exhibited by these
proteins. Distinct binding sites for phospholipid head groups are observed,
including a novel, double-Ca2+ recognition site for phosphoserine that may serve
as a phosphatidylserine receptor site in vivo.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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K.Schutters,
and
C.Reutelingsperger
(2010).
Phosphatidylserine targeting for diagnosis and treatment of human diseases.
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Apoptosis,
15,
1072-1082.
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P.A.Leventis,
and
S.Grinstein
(2010).
The distribution and function of phosphatidylserine in cellular membranes.
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Annu Rev Biophys,
39,
407-427.
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C.Cai,
H.Masumiya,
N.Weisleder,
N.Matsuda,
M.Nishi,
M.Hwang,
J.K.Ko,
P.Lin,
A.Thornton,
X.Zhao,
Z.Pan,
S.Komazaki,
M.Brotto,
H.Takeshima,
and
J.Ma
(2009).
MG53 nucleates assembly of cell membrane repair machinery.
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| |
Nat Cell Biol,
11,
56-64.
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J.M.Wojciak,
N.Zhu,
K.T.Schuerenberg,
K.Moreno,
W.S.Shestowsky,
M.Hiraiwa,
R.Sabbadini,
and
T.Huxford
(2009).
The crystal structure of sphingosine-1-phosphate in complex with a Fab fragment reveals metal bridging of an antibody and its antigen.
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Proc Natl Acad Sci U S A,
106,
17717-17722.
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PDB code:
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K.Monastyrskaya,
E.B.Babiychuk,
and
A.Draeger
(2009).
The annexins: spatial and temporal coordination of signaling events during cellular stress.
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Cell Mol Life Sci,
66,
2623-2642.
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L.N.Waehrens,
C.W.Heegaard,
G.E.Gilbert,
and
J.T.Rasmussen
(2009).
Bovine lactadherin as a calcium-independent imaging agent of phosphatidylserine expressed on the surface of apoptotic HeLa cells.
|
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J Histochem Cytochem,
57,
907-914.
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S.Sriskanthadevan,
T.Lee,
Z.Lin,
D.Yang,
and
C.H.Siu
(2009).
Cell adhesion molecule DdCAD-1 is imported into contractile vacuoles by membrane invagination in a Ca2+- and conformation-dependent manner.
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J Biol Chem,
284,
36377-36386.
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A.C.Rintala-Dempsey,
A.Rezvanpour,
and
G.S.Shaw
(2008).
S100-annexin complexes--structural insights.
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FEBS J,
275,
4956-4966.
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B.Jeppesen,
C.Smith,
D.F.Gibson,
and
J.F.Tait
(2008).
Entropic and enthalpic contributions to annexin V-membrane binding: a comprehensive quantitative model.
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J Biol Chem,
283,
6126-6135.
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C.Gelhaus,
T.Jacobs,
J.Andrä,
and
M.Leippe
(2008).
The antimicrobial peptide NK-2, the core region of mammalian NK-lysin, kills intraerythrocytic Plasmodium falciparum.
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Antimicrob Agents Chemother,
52,
1713-1720.
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D.B.Lee,
N.Jamgotchian,
S.G.Allen,
M.B.Abeles,
and
H.J.Ward
(2008).
A lipid-protein hybrid model for tight junction.
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Am J Physiol Renal Physiol,
295,
F1601-F1612.
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F.Calderon,
and
H.Y.Kim
(2008).
Detection of intracellular phosphatidylserine in living cells.
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J Neurochem,
104,
1271-1279.
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H.Païdassi,
P.Tacnet-Delorme,
V.Garlatti,
C.Darnault,
B.Ghebrehiwet,
C.Gaboriaud,
G.J.Arlaud,
and
P.Frachet
(2008).
C1q binds phosphatidylserine and likely acts as a multiligand-bridging molecule in apoptotic cell recognition.
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J Immunol,
180,
2329-2338.
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PDB codes:
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M.A.Lemmon
(2008).
Membrane recognition by phospholipid-binding domains.
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Nat Rev Mol Cell Biol,
9,
99.
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N.J.Hu,
J.Bradshaw,
H.Lauter,
J.Buckingham,
E.Solito,
and
A.Hofmann
(2008).
Membrane-induced folding and structure of membrane-bound annexin A1 N-terminal peptides: implications for annexin-induced membrane aggregation.
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Biophys J,
94,
1773-1781.
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R.G.Hanshaw,
R.V.Stahelin,
and
B.D.Smith
(2008).
Noncovalent keystone interactions controlling biomembrane structure.
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Chemistry,
14,
1690-1697.
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S.Y.Park,
S.Y.Kim,
M.Y.Jung,
D.J.Bae,
and
I.S.Kim
(2008).
Epidermal growth factor-like domain repeat of stabilin-2 recognizes phosphatidylserine during cell corpse clearance.
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Mol Cell Biol,
28,
5288-5298.
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C.Santiago,
A.Ballesteros,
L.Martínez-Muñoz,
M.Mellado,
G.G.Kaplan,
G.J.Freeman,
and
J.M.Casasnovas
(2007).
Structures of T cell immunoglobulin mucin protein 4 show a metal-Ion-dependent ligand binding site where phosphatidylserine binds.
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Immunity,
27,
941-951.
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PDB codes:
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D.Konopka-Postupolska
(2007).
Annexins: putative linkers in dynamic membrane-cytoskeleton interactions in plant cells.
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Protoplasma,
230,
203-215.
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J.M.Malleier,
O.Oskolkova,
V.Bochkov,
I.Jerabek,
B.Sokolikova,
T.Perkmann,
J.Breuss,
B.R.Binder,
and
M.Geiger
(2007).
Regulation of protein C inhibitor (PCI) activity by specific oxidized and negatively charged phospholipids.
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Blood,
109,
4769-4776.
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N.Colloc'h,
J.Sopkova-de Oliveira Santos,
P.Retailleau,
D.Vivarès,
F.Bonneté,
B.Langlois d'Estainto,
B.Gallois,
A.Brisson,
J.J.Risso,
M.Lemaire,
T.Prangé,
and
J.H.Abraini
(2007).
Protein crystallography under xenon and nitrous oxide pressure: comparison with in vivo pharmacology studies and implications for the mechanism of inhaled anesthetic action.
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Biophys J,
92,
217-224.
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PDB codes:
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O.Zschörnig,
F.Opitz,
and
M.Müller
(2007).
Annexin A4 binding to anionic phospholipid vesicles modulated by pH and calcium.
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Eur Biophys J,
36,
415-424.
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T.Fischer,
L.Lu,
H.T.Haigler,
and
R.Langen
(2007).
Annexin B12 is a sensor of membrane curvature and undergoes major curvature-dependent structural changes.
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J Biol Chem,
282,
9996.
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W.Q.Chen,
A.Viidik,
M.Skalicky,
H.Höger,
and
G.Lubec
(2007).
Hippocampal signaling cascades are modulated in voluntary and treadmill exercise rats.
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Electrophoresis,
28,
4392-4400.
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A.González,
S.Ravassa,
B.López,
I.Loperena,
R.Querejeta,
and
J.Díez
(2006).
Apoptosis in hypertensive heart disease: a clinical approach.
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Curr Opin Cardiol,
21,
288-294.
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C.Shao,
F.Zhang,
M.M.Kemp,
R.J.Linhardt,
D.M.Waisman,
J.F.Head,
and
B.A.Seaton
(2006).
Crystallographic analysis of calcium-dependent heparin binding to annexin A2.
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J Biol Chem,
281,
31689-31695.
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PDB codes:
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F.Merzel,
M.Hodoscek,
D.Janezic,
and
A.Sanson
(2006).
New force field for calcium binding sites in annexin-membrane complexes.
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J Comput Chem,
27,
446-452.
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K.M.DiVittorio,
J.R.Johnson,
E.Johansson,
A.J.Reynolds,
K.A.Jolliffe,
and
B.D.Smith
(2006).
Synthetic peptides with selective affinity for apoptotic cells.
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Org Biomol Chem,
4,
1966-1976.
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D.A.Coil,
and
A.D.Miller
(2005).
Enhancement of enveloped virus entry by phosphatidylserine.
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J Virol,
79,
11496-11500.
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M.Osawa,
A.Dace,
K.I.Tong,
A.Valiveti,
M.Ikura,
and
J.B.Ames
(2005).
Mg2+ and Ca2+ differentially regulate DNA binding and dimerization of DREAM.
|
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J Biol Chem,
280,
18008-18014.
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V.Gerke,
C.E.Creutz,
and
S.E.Moss
(2005).
Annexins: linking Ca2+ signalling to membrane dynamics.
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Nat Rev Mol Cell Biol,
6,
449-461.
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D.A.Coil,
and
A.D.Miller
(2004).
Phosphatidylserine is not the cell surface receptor for vesicular stomatitis virus.
|
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J Virol,
78,
10920-10926.
|
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J.M.Isas,
R.Langen,
W.L.Hubbell,
and
H.T.Haigler
(2004).
Structure and dynamics of a helical hairpin that mediates calcium-dependent membrane binding of annexin B12.
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J Biol Chem,
279,
32492-32498.
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M.Jin,
C.Smith,
H.Y.Hsieh,
D.F.Gibson,
and
J.F.Tait
(2004).
Essential role of B-helix calcium binding sites in annexin V-membrane binding.
|
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J Biol Chem,
279,
40351-40357.
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M.Seto,
M.Whitlow,
M.A.McCarrick,
S.Srinivasan,
Y.Zhu,
R.Pagila,
R.Mintzer,
D.Light,
A.Johns,
and
J.A.Meurer-Ogden
(2004).
A model of the acid sphingomyelinase phosphoesterase domain based on its remote structural homolog purple acid phosphatase.
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Protein Sci,
13,
3172-3186.
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PDB code:
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O.Lambert,
N.Cavusoglu,
J.Gallay,
M.Vincent,
J.L.Rigaud,
J.P.Henry,
and
J.Ayala-Sanmartin
(2004).
Novel organization and properties of annexin 2-membrane complexes.
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J Biol Chem,
279,
10872-10882.
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V.Khalaj,
P.Hey,
L.Smith,
G.D.Robson,
and
J.Brookman
(2004).
The Aspergillus niger annexin, anxC3.1 is constitutively expressed and is not essential for protein secretion.
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FEMS Microbiol Lett,
239,
163-169.
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M.Huang,
A.C.Rigby,
X.Morelli,
M.A.Grant,
G.Huang,
B.Furie,
B.Seaton,
and
B.C.Furie
(2003).
Structural basis of membrane binding by Gla domains of vitamin K-dependent proteins.
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Nat Struct Biol,
10,
751-756.
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PDB codes:
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R.V.Stahelin,
F.Long,
B.J.Peter,
D.Murray,
P.De Camilli,
H.T.McMahon,
and
W.Cho
(2003).
Contrasting membrane interaction mechanisms of AP180 N-terminal homology (ANTH) and epsin N-terminal homology (ENTH) domains.
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J Biol Chem,
278,
28993-28999.
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W.G.Hill,
M.A.Kaetzel,
B.K.Kishore,
J.R.Dedman,
and
M.L.Zeidel
(2003).
Annexin A4 reduces water and proton permeability of model membranes but does not alter aquaporin 2-mediated water transport in isolated endosomes.
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J Gen Physiol,
121,
413-425.
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Y.Mo,
B.Campos,
T.R.Mealy,
L.Commodore,
J.F.Head,
J.R.Dedman,
and
B.A.Seaton
(2003).
Interfacial basic cluster in annexin V couples phospholipid binding and trimer formation on membrane surfaces.
|
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J Biol Chem,
278,
2437-2443.
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PDB codes:
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Y.Shikamoto,
T.Morita,
Z.Fujimoto,
and
H.Mizuno
(2003).
Crystal structure of Mg2+- and Ca2+-bound Gla domain of factor IX complexed with binding protein.
|
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J Biol Chem,
278,
24090-24094.
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PDB codes:
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K.Kastl,
M.Ross,
V.Gerke,
and
C.Steinem
(2002).
Kinetics and thermodynamics of annexin A1 binding to solid-supported membranes: a QCM study.
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Biochemistry,
41,
10087-10094.
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P.Montaville,
J.M.Neumann,
F.Russo-Marie,
F.Ochsenbein,
and
A.Sanson
(2002).
A new consensus sequence for phosphatidylserine recognition by annexins.
|
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J Biol Chem,
277,
24684-24693.
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A.Janshoff,
M.Ross,
V.Gerke,
and
C.Steinem
(2001).
Visualization of annexin I binding to calcium-induced phosphatidylserine domains.
|
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Chembiochem,
2,
587-590.
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I.Capila,
M.J.Hernáiz,
Y.D.Mo,
T.R.Mealy,
B.Campos,
J.R.Dedman,
R.J.Linhardt,
and
B.A.Seaton
(2001).
Annexin V--heparin oligosaccharide complex suggests heparan sulfate--mediated assembly on cell surfaces.
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Structure,
9,
57-64.
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PDB code:
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A.G.Buckland,
and
D.C.Wilton
(2000).
Anionic phospholipids, interfacial binding and the regulation of cell functions.
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Biochim Biophys Acta,
1483,
199-216.
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E.Bitto,
M.Li,
A.M.Tikhonov,
M.L.Schlossman,
and
W.Cho
(2000).
Mechanism of annexin I-mediated membrane aggregation.
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Biochemistry,
39,
13469-13477.
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J.H.Hurley,
and
S.Misra
(2000).
Signaling and subcellular targeting by membrane-binding domains.
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Annu Rev Biophys Biomol Struct,
29,
49-79.
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J.L.Pellequer,
A.J.Gale,
and
E.D.Getzoff
(2000).
Blood coagulation: The outstanding hydrophobic residues.
|
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Curr Biol,
10,
R237-R240.
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J.M.Isas,
J.P.Cartailler,
Y.Sokolov,
D.R.Patel,
R.Langen,
H.Luecke,
J.E.Hall,
and
H.T.Haigler
(2000).
Annexins V and XII insert into bilayers at mildly acidic pH and form ion channels.
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Biochemistry,
39,
3015-3022.
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J.P.Cartailler,
H.T.Haigler,
and
H.Luecke
(2000).
Annexin XII E105K crystal structure: identification of a pH-dependent switch for mutant hexamerization.
|
| |
Biochemistry,
39,
2475-2483.
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PDB code:
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Y.Sokolov,
W.S.Mailliard,
N.Tranngo,
M.Isas,
H.Luecke,
H.T.Haigler,
and
J.E.Hall
(2000).
Annexins V and XII alter the properties of planar lipid bilayers seen by conductance probes.
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J Gen Physiol,
115,
571-582.
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F.Russo-Marie
(1999).
Annexin V and phospholipid metabolism.
|
| |
Clin Chem Lab Med,
37,
287-291.
|
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F.Wu,
C.R.Flach,
B.A.Seaton,
T.R.Mealy,
and
R.Mendelsohn
(1999).
Stability of annexin V in ternary complexes with Ca2+ and anionic phospholipids: IR studies of monolayer and bulk phases.
|
| |
Biochemistry,
38,
792-799.
|
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J.A.Glomset
(1999).
Protein-lipid interactions on the surfaces of cell membranes.
|
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Curr Opin Struct Biol,
9,
425-427.
|
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J.Sopkova,
M.Vincent,
M.Takahashi,
A.Lewit-Bentley,
and
J.Gallay
(1999).
Conformational flexibility of domain III of annexin V at membrane/water interfaces.
|
| |
Biochemistry,
38,
5447-5458.
|
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L.Cézanne,
A.Lopez,
F.Loste,
G.Parnaud,
O.Saurel,
P.Demange,
and
J.F.Tocanne
(1999).
Organization and dynamics of the proteolipid complexes formed by annexin V and lipids in planar supported lipid bilayers.
|
| |
Biochemistry,
38,
2779-2786.
|
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N.Verdaguer,
S.Corbalan-Garcia,
W.F.Ochoa,
I.Fita,
and
J.C.Gómez-Fernández
(1999).
Ca(2+) bridges the C2 membrane-binding domain of protein kinase Calpha directly to phosphatidylserine.
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| |
EMBO J,
18,
6329-6338.
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PDB code:
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O.Perisic,
H.F.Paterson,
G.Mosedale,
S.Lara-González,
and
R.L.Williams
(1999).
Mapping the phospholipid-binding surface and translocation determinants of the C2 domain from cytosolic phospholipase A2.
|
| |
J Biol Chem,
274,
14979-14987.
|
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R.B.Sutton,
J.A.Ernst,
and
A.T.Brunger
(1999).
Crystal structure of the cytosolic C2A-C2B domains of synaptotagmin III. Implications for Ca(+2)-independent snare complex interaction.
|
| |
J Cell Biol,
147,
589-598.
|
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PDB code:
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B.Campos,
Y.D.Mo,
T.R.Mealy,
C.W.Li,
M.A.Swairjo,
C.Balch,
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PDB code:
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PDB code:
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PDB codes:
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PDB codes:
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
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only a partial list as not all journals are covered by
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Where a reference describes a PDB structure, the PDB
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}
}
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