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Immune system PDB-id
2jg9
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Description
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Protein chains
134 a.a. *
133 a.a. *
129 a.a. *
Metal ions
_CA ×2
Waters ×109

* Residue conservation analysis
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PDB id: 2jg9
Name: Immune system
Title: Crystallographic structure of human c1q globular heads (p1)

Structure:
Complement c1q subcomponent subunit a. Chain: a, d. Fragment: c-terminal globular region, residues 112-245. Synonym: c1q chain a. Complement c1q subcomponent subunit b. Chain: b, e. Fragment: c terminal globular domain, residues 116-251. Synonym: c1q chain b. Complement c1q subcomponent subunit c.

Source:
Homo sapiens. Human. Organism_taxid: 9606. Synthetic: yes. Organism_taxid: 9606

UniProt:
Chains A, D: P02745 (C1QA_HUMAN)
Pfam   ArchSchema ?
Seq: 245 a.a.
Struc: 134 a.a.

Chains B, E: P02746 (C1QB_HUMAN)
Pfam   ArchSchema ?
Seq: 251 a.a.
Struc: 133 a.a.

Chains C, F: P02747 (C1QC_HUMAN)
Pfam   ArchSchema ?
Seq: 245 a.a.
Struc: 129 a.a.
Key:    PfamA domain
 Secondary structure  CATH domain

Resolution:
1.90Å

R-factor:
0.219

R-free:
0.260

Authors:
H.Paidassi,P.Tacnet-Delorme,V.Garlatti,C.Darnault, B.Ghebrehiwet,C.Gaboriaud,G.J.Arlaud,P.Frachet

Key ref:
H.Païdassi et al. (2008). C1q binds phosphatidylserine and likely acts as a multiligand-bridging molecule in apoptotic cell recognition.. J Immunol, 180, 2329-2338. [PubMed id: 18250442]

Date:
09-Feb-07

Release date:
19-Feb-08

Related entries:
2jg8 crystallographic structure of human c1q globular heads complexed to phosphatidyl- serine
1pk6 globular head of the complement system protein c1q
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    Key reference    
 
 
Full text J Immunol 180:2329-2338 (2008)
PubMed id: 18250442  
 
 
C1q binds phosphatidylserine and likely acts as a multiligand-bridging molecule in apoptotic cell recognition.
H.Païdassi, P.Tacnet-Delorme, V.Garlatti, C.Darnault, B.Ghebrehiwet, C.Gaboriaud, G.J.Arlaud, P.Frachet.
 
  ABSTRACT  
 
Efficient apoptotic cell clearance is critical for maintenance of tissue homeostasis, and to control the immune responses mediated by phagocytes. Little is known about the molecules that contribute "eat me" signals on the apoptotic cell surface. C1q, the recognition unit of the C1 complex of complement, also senses altered structures from self and is a major actor of immune tolerance. HeLa cells were rendered apoptotic by UV-B treatment and a variety of cellular and molecular approaches were used to investigate the nature of the target(s) recognized by C1q. Using surface plasmon resonance, C1q binding was shown to occur at early stages of apoptosis and to involve recognition of a cell membrane component. C1q binding and phosphatidylserine (PS) exposure, as measured by annexin V labeling, proceeded concomitantly, and annexin V inhibited C1q binding in a dose-dependent manner. As shown by cosedimentation, surface plasmon resonance, and x-ray crystallographic analyses, C1q recognized PS specifically and avidly (K(D) = 3.7-7 x 10(-8) M), through multiple interactions between its globular domain and the phosphoserine group of PS. Confocal microscopy revealed that the majority of the C1q molecules were distributed in membrane patches where they colocalized with PS. In summary, PS is one of the C1q ligands on apoptotic cells, and C1q-PS interaction takes place at early stages of apoptosis, in newly organized membrane patches. Given its versatile recognition properties, these data suggest that C1q has the unique ability to sense different markers which collectively would provide strong eat me signals, thereby allowing efficient apoptotic cell removal.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
19919576 D.A.Fraser, K.Pisalyaput, and A.J.Tenner (2010).
C1q enhances microglial clearance of apoptotic neurons and neuronal blebs, and modulates subsequent inflammatory cytokine production.
  J Neurochem, 112, 733-743.  
19302245 B.Gullstrand, U.Mårtensson, G.Sturfelt, A.A.Bengtsson, and L.Truedsson (2009).
Complement classical pathway components are all important in clearance of apoptotic and secondary necrotic cells.
  Clin Exp Immunol, 156, 303-311.  
19321608 J.Tian, Z.Xu, J.S.Smith, S.E.Hofherr, M.A.Barry, and A.P.Byrnes (2009).
Adenovirus activates complement by distinctly different mechanisms in vitro and in vivo: indirect complement activation by virions in vivo.
  J Virol, 83, 5648-5658.  
  19763574 L.Walter, and H.Neumann (2009).
Role of microglia in neuronal degeneration and regeneration.
  Semin Immunopathol, 31, 513-525.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.