 |
PDBsum entry 1a8b
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1a8b calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1a8b
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
7 tunnels,
coloured by tunnel radius |
|
7 tunnels,
coloured by
tunnel radius
|
7 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.27 |
1.27 |
16.0 |
0.49 |
0.19 |
13.2 |
90 |
|
1 |
2 |
1 |
4 |
0 |
0 |
0 |
|
|
 |
|
2 |
 |
1.27 |
1.27 |
18.8 |
1.50 |
0.49 |
9.3 |
86 |
1 |
3 |
1 |
6 |
0 |
0 |
0 |
|
|
3 |
 |
1.21 |
1.20 |
23.2 |
0.87 |
0.10 |
7.6 |
82 |
1 |
1 |
3 |
10 |
1 |
0 |
0 |
|
|
4 |
 |
1.52 |
1.93 |
17.0 |
-0.51 |
-0.40 |
8.9 |
85 |
1 |
0 |
2 |
3 |
0 |
1 |
0 |
|
|
5 |
 |
1.48 |
1.48 |
18.9 |
0.08 |
-0.06 |
12.4 |
91 |
2 |
0 |
2 |
5 |
0 |
1 |
0 |
|
|
6 |
 |
1.55 |
1.92 |
20.3 |
0.62 |
0.19 |
13.7 |
88 |
2 |
1 |
0 |
7 |
0 |
0 |
0 |
|
 |
7 |
 |
1.57 |
1.91 |
27.4 |
-0.65 |
-0.26 |
14.8 |
84 |
2 |
2 |
1 |
4 |
0 |
2 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program