PDB 6zqc structure summary ‹ Protein Data Bank in Europe (PDBe)

Function and Biology Details

Reaction catalysed:

S-adenosyl-L-methionine + pseudouridine(1191) in yeast 18S rRNA = S-adenosyl-L-homocysteine + N(1)-methylpseudouridine(1191) in yeast 18S rRNA

Biochemical function:

protein binding

Biological process:

ribosome biogenesis

Cellular component:

nucleolus

Sequence domains:

170 more domains

Structure analysis Details

Assembly composition:

hetero 71-mer (preferred)

Assembly name:

RCL1-BMS1 40S ribosomal subunit maturation complex and RNA (preferred)

PDBe Complex ID:

PDB-CPX-126868 (preferred)

Entry contents:

64 distinct polypeptide molecules
3 distinct RNA molecules

Macromolecules (67 distinct):

rRNA 2'-O-methyltransferase fibrillarin Chains: CA, CB

Molecule details ›

Chains: CA, CB
Length: 327 amino acids
Theoretical weight: 34.53 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P15646 (Residues: 1-327; Coverage: 100%)

Gene names: D2870, LOT3, NOP1, YDL014W
Sequence domains: Fibrillarin

Small ribosomal subunit protein eS1A Chain: DA

Molecule details ›

Chain: DA
Length: 255 amino acids
Theoretical weight: 28.8 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P33442 (Residues: 1-255; Coverage: 100%)

Gene names: L9753.9, PLC1, RPS10A, RPS1A, YLR441C
Sequence domains: Ribosomal S3Ae family

RNA cytidine acetyltransferase Chains: JA, JB

Molecule details ›

Chains: JA, JB
Length: 1056 amino acids
Theoretical weight: 119.51 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P53914 (Residues: 1-1056; Coverage: 100%)

Gene names: KRE33, N1216, N1858, NAT10, RRA1, YNL132W
Sequence domains:

Periodic tryptophan protein 2 Chain: UA

Molecule details ›

Chain: UA
Length: 923 amino acids
Theoretical weight: 104.1 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P25635 (Residues: 1-923; Coverage: 100%)

Gene names: PWP2, UTP1, YCR057C, YCR55C/YCR57C/YCR58C
Sequence domains:

Nucleolar complex protein 14 Chain: UB

Molecule details ›

Chain: UB
Length: 810 amino acids
Theoretical weight: 94.46 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q99207 (Residues: 1-810; Coverage: 100%)

Gene names: D1566, NOP14, UTP2, YDL148C
Sequence domains: Nop14-like family

Something about silencing protein 10 Chain: UC

Molecule details ›

Chain: UC
Length: 610 amino acids
Theoretical weight: 70.36 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q12136 (Residues: 1-610; Coverage: 100%)

Gene names: D1545, SAS10, UTP3, YDL153C
Sequence domains:

U3 small nucleolar RNA-associated protein 4 Chain: UD

Molecule details ›

Chain: UD
Length: 776 amino acids
Theoretical weight: 87.91 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q06679 (Residues: 1-776; Coverage: 100%)

Gene names: UTP4, YDR324C
Sequence domains: WD domain, G-beta repeat

U3 small nucleolar RNA-associated protein 5 Chain: UE

Molecule details ›

Chain: UE
Length: 643 amino acids
Theoretical weight: 72.08 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q04177 (Residues: 1-643; Coverage: 100%)

Gene names: D9509.17, UTP5, YDR398W
Sequence domains: Dip2/Utp12 Family

U3 small nucleolar RNA-associated protein 6 Chain: UF

Molecule details ›

Chain: UF
Length: 440 amino acids
Theoretical weight: 52.5 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q02354 (Residues: 1-440; Coverage: 100%)

Gene names: D9461.34, UTP6, YDR449C
Sequence domains: U3 small nucleolar RNA-associated protein 6

U3 small nucleolar RNA-associated protein 7 Chain: UG

Molecule details ›

Chain: UG
Length: 554 amino acids
Theoretical weight: 62.42 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P40055 (Residues: 1-554; Coverage: 100%)

Gene names: KRE31, UTP7, YER082C
Sequence domains:

U3 small nucleolar RNA-associated protein 8 Chain: UH

Molecule details ›

Chain: UH
Length: 713 amino acids
Theoretical weight: 80.27 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P53276 (Residues: 1-713; Coverage: 100%)

Gene names: UTP8, YGR128C
Sequence domains: Utp8 family

U3 small nucleolar RNA-associated protein 9 Chain: UI

Molecule details ›

Chain: UI
Length: 575 amino acids
Theoretical weight: 65.35 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P38882 (Residues: 1-575; Coverage: 100%)

Gene names: UTP9, YHR196W

U3 small nucleolar RNA-associated protein 10 Chain: UJ

Molecule details ›

Chain: UJ
Length: 1769 amino acids
Theoretical weight: 200.3 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P42945 (Residues: 1-1769; Coverage: 100%)

Gene names: J0808, UTP10, YJL109C
Sequence domains:

U3 small nucleolar RNA-associated protein 11 Chain: UK

Molecule details ›

Chain: UK
Length: 250 amino acids
Theoretical weight: 29.81 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P34247 (Residues: 1-250; Coverage: 100%)

Gene names: UTP11, YKL099C, YKL449
Sequence domains: Utp11 protein

U3 small nucleolar RNA-associated protein 12 Chain: UL

Molecule details ›

Chain: UL
Length: 943 amino acids
Theoretical weight: 106.48 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q12220 (Residues: 1-943; Coverage: 100%)

Gene names: DIP2, L3116, L9233.1, UTP12, YLR129W
Sequence domains:

U3 small nucleolar RNA-associated protein 13 Chain: UM

Molecule details ›

Chain: UM
Length: 817 amino acids
Theoretical weight: 91.13 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q05946 (Residues: 1-817; Coverage: 100%)

Gene names: UTP13, YLR222C
Sequence domains:

U3 small nucleolar RNA-associated protein 14 Chain: UN

Molecule details ›

Chain: UN
Length: 899 amino acids
Theoretical weight: 103.19 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q04500 (Residues: 1-899; Coverage: 100%)

Gene names: UTP14, YML093W
Sequence domains: Utp14 protein

U3 small nucleolar RNA-associated protein 15 Chain: UO

Molecule details ›

Chain: UO
Length: 513 amino acids
Theoretical weight: 57.77 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q04305 (Residues: 1-513; Coverage: 100%)

Gene names: UTP15, YM9582.18, YMR093W
Sequence domains:

U3 small nucleolar RNA-associated protein 16 Chain: UP

Molecule details ›

Chain: UP
Length: 214 amino acids
Theoretical weight: 24.43 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q08492 (Residues: 1-214; Coverage: 100%)

Gene names: BUD21, UTP16, YOR078W, YOR29-29
Sequence domains: U3 snoRNA associated

NET1-associated nuclear protein 1 Chain: UQ

Molecule details ›

Chain: UQ
Length: 896 amino acids
Theoretical weight: 101.34 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q02931 (Residues: 1-896; Coverage: 100%)

Gene names: NAN1, UTP17, YPL126W
Sequence domains: WD domain, G-beta repeat

U3 small nucleolar RNA-associated protein 18 Chain: UR

Molecule details ›

Chain: UR
Length: 594 amino acids
Theoretical weight: 66.49 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P40362 (Residues: 1-594; Coverage: 100%)

Gene names: HRE594, J1098, UTP18, YJL069C
Sequence domains: WD domain, G-beta repeat

Nucleolar complex protein 4 Chain: US

Molecule details ›

Chain: US
Length: 552 amino acids
Theoretical weight: 63.71 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q06512 (Residues: 1-552; Coverage: 100%)

Gene names: NOC4, UTP19, YPR144C
Sequence domains: CBF/Mak21 family

U3 small nucleolar RNA-associated protein 20 Chain: UT

Molecule details ›

Chain: UT
Length: 2493 amino acids
Theoretical weight: 287.92 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P35194 (Residues: 1-2493; Coverage: 100%)

Gene names: UTP20, YBL004W, YBL0101
Sequence domains:

U3 small nucleolar RNA-associated protein 21 Chain: UU

Molecule details ›

Chain: UU
Length: 939 amino acids
Theoretical weight: 104.93 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q06078 (Residues: 1-939; Coverage: 100%)

Gene names: L8084.22, UTP21, YLR409C
Sequence domains:

U3 small nucleolar RNA-associated protein 22 Chain: UV

Molecule details ›

Chain: UV
Length: 1237 amino acids
Theoretical weight: 140.66 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P53254 (Residues: 1-1237; Coverage: 100%)

Gene names: UTP22, YGR090W
Sequence domains:

rRNA-processing protein FCF1 Chain: UX

Molecule details ›

Chain: UX
Length: 189 amino acids
Theoretical weight: 21.65 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q05498 (Residues: 1-189; Coverage: 100%)

Gene names: D9651.9, FCF1, YDR339C
Sequence domains: Fcf1

Ribosome biogenesis protein UTP30 Chain: UZ

Molecule details ›

Chain: UZ
Length: 274 amino acids
Theoretical weight: 31.67 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P36144 (Residues: 1-274; Coverage: 100%)

Gene names: UTP30, YKR060W
Sequence domains: Ribosomal protein L1p/L10e family

Nucleolar protein 56 Chain: CD

Molecule details ›

Chain: CD
Length: 504 amino acids
Theoretical weight: 56.96 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q12460 (Residues: 1-504; Coverage: 100%)

Gene names: L8167.9, NOP56, SIK1, YLR197W
Sequence domains:

Nucleolar protein 58 Chain: CE

Molecule details ›

Chain: CE
Length: 511 amino acids
Theoretical weight: 57.06 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q12499 (Residues: 1-511; Coverage: 100%)

Gene names: NOP5, NOP58, O6108, YOR310C
Sequence domains:

13 kDa ribonucleoprotein-associated protein Chains: CF, CG

Molecule details ›

Chains: CF, CG
Length: 126 amino acids
Theoretical weight: 13.58 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P39990 (Residues: 1-126; Coverage: 100%)

Gene names: SNU13, YEL026W
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Ribosomal RNA-processing protein 9 Chain: CH

Molecule details ›

Chain: CH
Length: 573 amino acids
Theoretical weight: 65.15 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q06506 (Residues: 1-573; Coverage: 100%)

Gene names: RRP9, YPR137W
Sequence domains: WD domain, G-beta repeat

U3 small nucleolar ribonucleoprotein protein IMP3 Chain: CI

Molecule details ›

Chain: CI
Length: 183 amino acids
Theoretical weight: 21.93 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P32899 (Residues: 1-183; Coverage: 100%)

Gene names: IMP3, YHR148W
Sequence domains:

U3 small nucleolar ribonucleoprotein protein IMP4 Chain: CJ

Molecule details ›

Chain: CJ
Length: 290 amino acids
Theoretical weight: 33.54 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P53941 (Residues: 1-290; Coverage: 100%)

Gene names: IMP4, N2353, YNL075W
Sequence domains: Brix domain

U3 small nucleolar RNA-associated protein MPP10 Chain: CK

Molecule details ›

Chain: CK
Length: 593 amino acids
Theoretical weight: 67.04 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P47083 (Residues: 1-593; Coverage: 100%)

Gene names: J1411, MPP10, YJR002W, YJR83.5
Sequence domains: Mpp10 protein

Ribosome biogenesis protein BMS1 Chain: CL

Molecule details ›

Chain: CL
Length: 1183 amino acids
Theoretical weight: 135.79 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q08965 (Residues: 1-1183; Coverage: 100%)

Gene names: BMS1, YPL217C
Sequence domains:

RNA 3'-terminal phosphate cyclase-like protein Chain: CM

Molecule details ›

Chain: CM
Length: 367 amino acids
Theoretical weight: 40.22 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q08096 (Residues: 1-367; Coverage: 100%)

Gene names: RCL1, RTC1, YOL010W
Sequence domains:

Ribosomal RNA-processing protein 7 Chain: CN

Molecule details ›

Chain: CN
Length: 297 amino acids
Theoretical weight: 34.53 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P25368 (Residues: 1-297; Coverage: 100%)

Gene names: RRP7, YCL031C, YCL184, YCL31C
Sequence domains:

Ribosome biogenesis protein ENP2 Chain: JC

Molecule details ›

Chain: JC
Length: 707 amino acids
Theoretical weight: 81.86 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P48234 (Residues: 1-707; Coverage: 100%)

Gene names: ENP2, G6623, YGR145W
Sequence domains: NUC153 domain

Ribosomal RNA small subunit methyltransferase NEP1 Chains: JF, JG

Molecule details ›

Chains: JF, JG
Length: 252 amino acids
Theoretical weight: 27.94 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q06287 (Residues: 1-252; Coverage: 100%)

Gene names: EMG1, L9470.5, NEP1, YLR186W
Sequence domains: EMG1/NEP1 methyltransferase

Essential nuclear protein 1 Chain: JH

Molecule details ›

Chain: JH
Length: 483 amino acids
Theoretical weight: 55.21 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P38333 (Residues: 1-483; Coverage: 100%)

Gene names: ENP1, MEG1, YBR1635, YBR247C
Sequence domains: Bystin

rRNA biogenesis protein RRP5 Chain: JI

Molecule details ›

Chain: JI
Length: 1729 amino acids
Theoretical weight: 193.41 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q05022 (Residues: 1-1729; Coverage: 100%)

Gene names: FMI1, RRP5, YM9959.11C, YMR229C
Sequence domains: S1 RNA binding domain

Pre-rRNA-processing protein PNO1 Chain: JJ

Molecule details ›

Chain: JJ
Length: 274 amino acids
Theoretical weight: 30.38 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q99216 (Residues: 1-274; Coverage: 100%)

Gene names: DIM2, O3513, PNO1, RRP20, YOR145C, YOR3513C
Sequence domains: Krr1 KH1 domain

Protein BFR2 Chain: JK

Molecule details ›

Chain: JK
Length: 534 amino acids
Theoretical weight: 61.29 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q06631 (Residues: 1-534; Coverage: 100%)

Gene names: BFR2, YDR299W
Sequence domains:

rRNA-processing protein FCF2 Chain: JM

Molecule details ›

Chain: JM
Length: 217 amino acids
Theoretical weight: 25.69 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q12035 (Residues: 1-217; Coverage: 100%)

Gene names: FCF2, L2128, YLR051C
Sequence domains: Fcf2 pre-rRNA processing

Protein FAF1 Chain: JN

Molecule details ›

Chain: JN
Length: 346 amino acids
Theoretical weight: 38.96 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P40546 (Residues: 1-346; Coverage: 100%)

Gene names: FAF1, YIL019W

KRR1 small subunit processome component Chain: JO

Molecule details ›

Chain: JO
Length: 316 amino acids
Theoretical weight: 37.23 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P25586 (Residues: 1-316; Coverage: 100%)

Gene names: KRR1, YCL059C, YCL59C
Sequence domains:

Protein SOF1 Chain: JP

Molecule details ›

Chain: JP
Length: 489 amino acids
Theoretical weight: 56.89 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P33750 (Residues: 1-489; Coverage: 100%)

Gene names: L1339, SOF1, YLL011W
Sequence domains:

Regulator of rDNA transcription protein 14 Chain: JQ

Molecule details ›

Chain: JQ
Length: 206 amino acids
Theoretical weight: 23.9 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P40470 (Residues: 1-206; Coverage: 100%)

Gene names: RRT14, YIL127C
Sequence domains: Regular of rDNA transcription protein 14

Small ribosomal subunit protein eS4A Chain: DE

Molecule details ›

Chain: DE
Length: 261 amino acids
Theoretical weight: 29.47 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P0CX35 (Residues: 1-261; Coverage: 100%)

Gene names: J2186, RPS4A, RPS7B, YJR145C
Sequence domains:

Small ribosomal subunit protein uS7 Chain: DF

Molecule details ›

Chain: DF
Length: 225 amino acids
Theoretical weight: 25.07 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P26783 (Residues: 1-225; Coverage: 100%)

Gene names: J2045, RPS2, RPS5, YJR123W
Sequence domains: Ribosomal protein S7p/S5e

Small ribosomal subunit protein eS6A Chain: DG

Molecule details ›

Chain: DG
Length: 236 amino acids
Theoretical weight: 27.05 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P0CX37 (Residues: 1-236; Coverage: 100%)

Gene names: LPG18C, RPS101, RPS10B, RPS6A, YPL090C
Sequence domains: Ribosomal protein S6e

Small ribosomal subunit protein eS7A Chain: DH

Molecule details ›

Chain: DH
Length: 190 amino acids
Theoretical weight: 21.66 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P26786 (Residues: 1-190; Coverage: 100%)

Gene names: RPS30, RPS7A, YOR096W, YOR3177W
Sequence domains: Ribosomal protein S7e

Small ribosomal subunit protein eS8A Chain: DI

Molecule details ›

Chain: DI
Length: 200 amino acids
Theoretical weight: 22.54 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P0CX39 (Residues: 1-200; Coverage: 100%)

Gene names: RPS14A, RPS8A, YBL06.05, YBL0613, YBL072C
Sequence domains: Ribosomal protein S8e

Small ribosomal subunit protein uS4A Chain: DJ

Molecule details ›

Chain: DJ
Length: 197 amino acids
Theoretical weight: 22.49 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: O13516 (Residues: 1-197; Coverage: 100%)

Gene names: RPS13A, RPS9A, YPL081W, YS11A
Sequence domains:

Small ribosomal subunit protein uS17A Chain: DL

Molecule details ›

Chain: DL
Length: 156 amino acids
Theoretical weight: 17.79 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P0CX47 (Residues: 1-156; Coverage: 100%)

Gene names: RPS11A, RPS18A, YD9813.03, YDR025W
Sequence domains:

Small ribosomal subunit protein uS15 Chain: DN

Molecule details ›

Chain: DN
Length: 151 amino acids
Theoretical weight: 17.06 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P05756 (Residues: 1-151; Coverage: 100%)

Gene names: D4252, RPS13, RPS13C, YD9609.18, YDR064W
Sequence domains:

Small ribosomal subunit protein uS11A Chain: DO

Molecule details ›

Chain: DO
Length: 137 amino acids
Theoretical weight: 14.56 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P06367 (Residues: 1-137; Coverage: 100%)

Gene names: CRY1, RPL59, RPS14A, YCR031C, YCR31C
Sequence domains: Ribosomal protein S11

Small ribosomal subunit protein uS9A Chain: DQ

Molecule details ›

Chain: DQ
Length: 143 amino acids
Theoretical weight: 15.88 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P0CX51 (Residues: 1-143; Coverage: 100%)

Gene names: RP61R, RPS16A, YM9375.12, YMR143W
Sequence domains: Ribosomal protein S9/S16

Small ribosomal subunit protein uS13A Chain: DS

Molecule details ›

Chain: DS
Length: 146 amino acids
Theoretical weight: 17.07 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P0CX55 (Residues: 1-146; Coverage: 100%)

Gene names: D9461.35, RPS18A, YDR450W
Sequence domains: Ribosomal protein S13/S18

Small ribosomal subunit protein uS8A Chain: DW

Molecule details ›

Chain: DW
Length: 130 amino acids
Theoretical weight: 14.65 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P0C0W1 (Residues: 1-130; Coverage: 100%)

Gene names: J0355, RPS22A, RPS24, RPS24A, YJL190C
Sequence domains: Ribosomal protein S8

Small ribosomal subunit protein uS12A Chain: DX

Molecule details ›

Chain: DX
Length: 145 amino acids
Theoretical weight: 16.07 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P0CX29 (Residues: 1-145; Coverage: 100%)

Gene names: G6178, RPS23A, RPS28A, YGR118W
Sequence domains: Ribosomal protein S12/S23

Small ribosomal subunit protein eS24A Chain: DY

Molecule details ›

Chain: DY
Length: 135 amino acids
Theoretical weight: 15.36 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P0CX31 (Residues: 1-135; Coverage: 100%)

Gene names: RPS24A, RPS24EA, YER074W
Sequence domains: Ribosomal protein S24e

Small ribosomal subunit protein eS27A Chain: Db

Molecule details ›

Chain: Db
Length: 82 amino acids
Theoretical weight: 8.89 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: P35997 (Residues: 1-82; Coverage: 100%)

Gene names: RPS27A, YKL156W
Sequence domains: Ribosomal protein S27

Small ribosomal subunit protein eS28A Chain: Dc

Molecule details ›

Chain: Dc
Length: 67 amino acids
Theoretical weight: 7.61 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

Canonical: Q3E7X9 (Residues: 1-67; Coverage: 100%)

Gene names: O3600, RPS28A, RPS33, RPS33A, YOR167C
Sequence domains: Ribosomal protein S28e

5ETS RNA Chain: D2

Molecule details ›

Chain: D2
Length: 700 nucleotides
Theoretical weight: 225.54 KDa

18S Ribosomal RNA Chain: D3

Molecule details ›

Chain: D3
Length: 1808 nucleotides
Theoretical weight: 582.38 KDa
Sequence domains: Eukaryotic small subunit ribosomal RNA

U3 snoRNA Chain: D4

Molecule details ›

Chain: D4
Length: 333 nucleotides
Theoretical weight: 106.54 KDa
Sequence domains: Fungal small nucleolar RNA U3

Ligands and Environments

3 bound ligands:

No modified residues

Experiments and Validation Details

Resolution: 3.8Å

Relevant EMDB volumes: EMD-11359

Protein Data Bank in Europe

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Function and Biology Details

Structure analysis Details

Ligands and Environments

Experiments and Validation Details

Quick links

Citations

7 review citations

5 mentions without citation

PDBe › 6zqc

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Function and Biology Details

Structure analysis Details

Ligands and Environments

Experiments and Validation Details

Quick links

Citations

7 review citations

5 mentions without citation