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Dynamin 1 GTPase-BSE fusion dimer complexed with GDP

X-ray diffraction
1.7Å resolution
PDB entry 5d3q coloured by chain, front view.
PDB entry 5d3q coloured by chain, side view.
PDB entry 5d3q coloured by chain, top view.
Source organism: Homo sapiens
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Dynamin-1
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Multimeric state: monomeric
Accessible surface area: 14552.38 Å2
Buried surface area: 1056.58 Å2
Dissociation area: 159.43 Å2
Dissociation energy (ΔGdiss): -0.81 kcal/mol
Dissociation entropy (TΔSdiss): -0.27 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-170156
Assembly 2
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Assembly Name: Dynamin-1
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Multimeric state: monomeric
Accessible surface area: 15201.83 Å2
Buried surface area: 948.06 Å2
Dissociation area: 103.28 Å2
Dissociation energy (ΔGdiss): -2.68 kcal/mol
Dissociation entropy (TΔSdiss): -0.28 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-170156

Macromolecules

Dynamin-1
Chains: A, B
Length: 345 amino acids
Theoretical weight: 38.53 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q05193 (Residues: 5-320, 726-746; Coverage: 39%)
Gene names: DNM, DNM1
Pfam:
InterPro:
CATH: P-loop containing nucleotide triphosphate hydrolases
Dynamin-1 in PDB entry 5d3q, assembly 1, front view.
Dynamin-1 in PDB entry 5d3q, assembly 1, side view.
Dynamin-1 in PDB entry 5d3q, assembly 1, top view.
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