› 4ywh

X-ray diffraction
2.35Å resolution

CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM ACTINOBACILLUS SUCCINOGENES 130Z (Asuc_0499, TARGET EFI-511068) WITH BOUND D-XYLOSE

Released:
DOI: 10.2210/pdb4ywh/pdb
PDB entry 4ywh coloured by chain, front view.
PDB entry 4ywh coloured by chain, side view.
PDB entry 4ywh coloured by chain, top view.
Source organism: Actinobacillus succinogenes 130Z
Entry authors: Vetting MW, Al Obaidi NF, Toro R, Morisco LL, Benach J, Koss J, Wasserman SR, Attonito JD, Scott Glenn A, Chamala S, Chowdhury S, Lafleur J, Love J, Seidel RD, Whalen KL, Gerlt JA, Almo SC, Enzyme Function Initiative (EFI)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108138 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Periplasmic binding protein domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 332 amino acids
Theoretical weight: 36.64 KDa
Source organism: Actinobacillus succinogenes 130Z
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A6VLM7 (Residues: 1-1, 24-332; Coverage: 93%)
Gene name: Asuc_0499
Sequence domains: Periplasmic binding protein domain
Structure domains: Rossmann fold

Ligands and Environments

1 bound ligand:
Ligand XYP 2 x XYP
1 modified residue:
Ligand MSE 16 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 31-ID
Spacegroup: P21
Unit cell:
a: 80.796Å b: 37.67Å c: 105.336Å
α: 90° β: 91.5° γ: 90°
R-values:
R R work R free
0.161 0.157 0.238
Expression system: Escherichia coli BL21(DE3)

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