Pathways & interactions
Periplasmic binding protein (IPR025997)
Short name: SBP_2_dom
Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. Most of the bacterial ABC (ATP-binding cassette) importers are composed of one or two transmembrane permease proteins, one or two nucleotide-binding proteins and a highly specific periplasmic solute-binding protein. In Gram-negative bacteria the solute-binding proteins are dissolved in the periplasm, while in archaea and Gram-positive bacteria, their solute-binding proteins are membrane-anchored lipoproteins [PMID: 8003968, PMID: 18310026].
On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight family clusters [PMID: 8336670], which generally correlate with the nature of the solute bound. This entry represents the family 2 [PMID: 8336670, PMID: 6340108].
Family 2 members include:
- Autoinducer 2-binding protein LsrB from E. coli and Salmonella typhimurium [PMID: 15601708, PMID: 11722742]
- D-galactose-binding periplasmic protein
- Autoinducer 2-binding periplasmic protein LuxP
- D-ribose-binding periplasmic protein
- Multiple sugar-binding periplasmic receptor ChvE
This entry represents a domain found in a variety of bacterial periplasmic binding proteins belonging mainly to family 2.
- PF13407 (Peripla_BP_4)