› 1ndk

X-ray diffraction
2.2Å resolution

X-RAY STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE

Released:
DOI: 10.2210/pdb1ndk/pdb
PDB entry 1ndk coloured by chain, front view.
PDB entry 1ndk coloured by chain, side view.
PDB entry 1ndk coloured by chain, top view.
Source organism: Dictyostelium discoideum
Primary publication:
X-ray structure of nucleoside diphosphate kinase.
Dumas C, Lascu I, Moréra S, Glaser P, Fourme R, Wallet V, Lacombe ML, Véron M, Janin J
EMBO J 11 3203-8 (1992)
PMID: 1324167

Function and Biology Details

Reaction catalysed: 
ATP + nucleoside diphosphate = ADP + nucleoside triphosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-149819 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleoside diphosphate kinase, cytosolic Chain: A
Molecule details ›
Chain: A
Length: 155 amino acids
Theoretical weight: 16.78 KDa
Source organism: Dictyostelium discoideum
Expression system: Not provided
UniProt:
  • Canonical: P22887 (Residues: 1-155; Coverage: 100%)
Gene names: DDB_G0273069, DDB_G0273805, gip17, ndkB, ndkC-1, ndkC-2
Sequence domains: Nucleoside diphosphate kinase
Structure domains: Nucleoside diphosphate kinase-like domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P6322
Unit cell:
a: 72.7Å b: 72.7Å c: 107.5Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.203 0.203 not available
Expression system: Not provided

Quick links

Citations

19 review citations

Mammalian deoxyribonucleoside kinases.
Arnér et al. (1995)
18 more

1 mention without citation

Structure, Folding and Stability of Nucleoside Diphosphate Kinases.
Georgescauld et al. (2020)