› 1e9v

X-ray diffraction
1.79Å resolution

XENON BOUND IN HYDROPHOBIC CHANNEL OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS

Released:
DOI: 10.2210/pdb1e9v/pdb
PDB entry 1e9v coloured by chain, front view.
PDB entry 1e9v coloured by chain, side view.
PDB entry 1e9v coloured by chain, top view.
Source organism: Desulfovibrio vulgaris
Entry authors: Cooper SJ, Bailey S, Rizkallah PJ, Lindley PF

Function and Biology Details

Reaction catalysed: 
NH(3) + H(2)O + acceptor = hydroxylamine + reduced acceptor
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-151906 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Hydroxylamine reductase Chain: A
Molecule details ›
Chain: A
Length: 553 amino acids
Theoretical weight: 60.07 KDa
Source organism: Desulfovibrio vulgaris
Expression system: Desulfovibrio vulgaris
UniProt:
  • Canonical: P31101 (Residues: 1-553; Coverage: 100%)
Gene names: DVU_2013, hcp
Sequence domains: Prismane/CO dehydrogenase family
Structure domains:

Ligands and Environments

7 bound ligands:
Ligand FSO 1 x FSO
Ligand SF4 1 x SF4
Ligand XE 13 x XE
Ligand EDO 1 x EDO
Ligand ACY 1 x ACY
Ligand GOL 1 x GOL
Ligand TRS 1 x TRS
1 modified residue:
Ligand CSS 1 x CSS

Experiments and Validation Details

Entry percentile scores
X-ray source: SRS BEAMLINE PX7.2
Spacegroup: P212121
Unit cell:
a: 63.62Å b: 64.598Å c: 152.254Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.161 0.161 0.197
Expression system: Desulfovibrio vulgaris

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