Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0R7    

Bonds between two atoms of the molecule

Total Number of Bonds: 59


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O7 P3 O P doub 1.48 N N
2 O6 P3 O P sing 1.61 N N
3 P3 O5 P O sing 1.61 N N
4 P3 O3 P O sing 1.61 N N
5 O9 P2 O P doub 1.48 N N
6 O11 P1 O P doub 1.48 N N
7 O3 P2 O P sing 1.61 N N
8 P2 O8 P O sing 1.61 N N
9 P2 O1 P O sing 1.61 N N
10 C5' O5' C O sing 1.43 N N
11 C5' C4' C C sing 1.53 N N
12 P1 O1 P O sing 1.61 N N
13 P1 O5' P O sing 1.61 N N
14 P1 O10 P O sing 1.61 N N
15 C4' C3' C C sing 1.55 N N
16 C4' O4' C O sing 1.44 N N
17 C3' C2' C C sing 1.55 N N
18 O4' C1' O C sing 1.43 N N
19 C2' C1' C C sing 1.54 N N
20 C1' N1 C N sing 1.47 N N
21 C6 N1 C N sing 1.36 N N
22 C6 C5 C C doub 1.38 N N
23 N1 C2 N C sing 1.34 N N
24 C02 C03 C C doub 1.37 N Y
25 C02 C01 C C sing 1.4 N Y
26 C03 C04 C C sing 1.4 N Y
27 C1 C3 C C trip 1.17 N N
28 C1 C5 C C sing 1.43 N N
29 C3 C01 C C sing 1.43 N N
30 C5 C4 C C sing 1.47 N N
31 C01 C C C doub 1.4 N Y
32 C04 C7 C C sing 1.43 N N
33 C04 C05 C C doub 1.4 N Y
34 C2 O2 C O doub 1.22 N N
35 C2 N2 C N sing 1.33 N N
36 C7 C8 C C trip 1.17 N N
37 C C05 C C sing 1.37 N Y
38 C4 N2 C N doub 1.33 N N
39 C4 N3 C N sing 1.37 N N
40 O5 H1 O H sing 0.97 N N
41 O6 H2 O H sing 0.97 N N
42 O8 H3 O H sing 0.97 N N
43 O10 H4 O H sing 0.97 N N
44 C1' H5 C H sing 1.09 N N
45 C6 H6 C H sing 1.08 N N
46 N3 H7 N H sing 0.97 N N
47 N3 H8 N H sing 0.97 N N
48 C4' H9 C H sing 1.09 N N
49 C3' H10 C H sing 1.09 N N
50 C3' H11 C H sing 1.09 N N
51 C2' H12 C H sing 1.09 N N
52 C2' H13 C H sing 1.09 N N
53 C5' H14 C H sing 1.09 N N
54 C5' H15 C H sing 1.09 N N
55 C02 H16 C H sing 1.08 N N
56 C03 H17 C H sing 1.08 N N
57 C05 H18 C H sing 1.08 N N
58 C H19 C H sing 1.08 N N
59 C8 H20 C H sing 1.05 N N