Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0R7

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 57


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5' O O5' N N N 0 -1.242 1.78 -1.268
2 P1 P P1 N N N 0 -2.109 0.437 -1.455
3 O1 O O1 N N N 0 -3.36 0.46 -0.443
4 P2 P P2 N N N 0 -4.332 -0.674 0.16
5 O3 O O3 N N N 0 -5.689 0.011 0.692
6 P3 P P3 N N N 0 -7.139 -0.554 1.104
7 O5 O O5 N N N 0 -7.076 -1.157 2.596
8 O6 O O6 N N N 0 -8.215 0.642 1.054
9 O7 O O7 N N N 0 -7.541 -1.619 0.159
10 O8 O O8 N N N 0 -3.594 -1.421 1.38
11 O9 O O9 N N N 0 -4.657 -1.658 -0.897
12 O10 O O10 N N N 0 -2.646 0.352 -2.971
13 O11 O O11 N N N 0 -1.262 -0.742 -1.166
14 C1' C C1' R N N 0 2.164 4.15 -0.023
15 N1 N N1 N N N 0 3.257 3.325 0.499
16 C6 C C6 N N N 0 3.253 1.985 0.266
17 C5 C C5 N N N 0 4.289 1.218 0.763
18 C1 C C1 N N N 0 4.33 -0.196 0.545
19 C3 C C3 N N N 0 4.364 -1.356 0.366
20 N2 N N2 N N N 0 5.265 3.208 1.698
21 C4 C C4 N N N 0 5.346 1.897 1.522
22 C2 C C2 N N N 0 4.248 3.905 1.194
23 O2 O O2 N N N 0 4.214 5.111 1.374
24 N3 N N3 N N N 0 6.401 1.186 2.04
25 O4' O O4' N N N 0 0.984 3.353 -0.176
26 C4' C C4' S N N 0 0.55 3.378 -1.545
27 C3' C C3' N N N 0 1.823 3.704 -2.367
28 C2' C C2' N N N 0 2.542 4.701 -1.415
29 C5' C C5' N N N 0 -0.0080 2.012 -1.95
30 C01 C C01 N Y N 0 4.405 -2.771 0.147
31 C02 C C02 N Y N 0 3.39 -3.396 -0.585
32 C03 C C03 N Y N 0 3.43 -4.745 -0.793
33 C04 C C04 N Y N 0 4.486 -5.501 -0.276
34 C05 C C05 N Y N 0 5.5 -4.878 0.455
35 C C C N Y N 0 5.465 -3.527 0.66
36 C7 C C7 N N N 0 4.527 -6.916 -0.495
37 C8 C C8 N N N 0 4.562 -8.075 -0.675
38 H1 H H1 N N N 0 -6.818 -0.513 3.27
39 H2 H H2 N N N 0 -9.113 0.374 1.291
40 H3 H H3 N N N 0 -3.351 -0.835 2.111
41 H4 H H4 N N N 0 -3.21 1.094 -3.23
42 H5 H H5 N N N 0 1.967 4.976 0.66
43 H6 H H6 N N N 0 2.453 1.529 -0.298
44 H7 H H7 N N N 0 6.451 0.227 1.907
45 H8 H H8 N N N 0 7.095 1.644 2.54
46 H9 H H9 N N N 0 -0.203 4.153 -1.69
47 H10 H H10 N N N 0 2.425 2.81 -2.529
48 H11 H H11 N N N 0 1.567 4.18 -3.314
49 H12 H H12 N N N 0 2.159 5.712 -1.55
50 H13 H H13 N N N 0 3.622 4.67 -1.565
51 H14 H H14 N N N 0 0.707 1.234 -1.682
52 H15 H H15 N N N 0 -0.179 1.993 -3.026
53 H16 H H16 N N N 0 2.574 -2.812 -0.984
54 H17 H H17 N N N 0 2.646 -5.228 -1.358
55 H18 H H18 N N N 0 6.315 -5.463 0.855
56 H19 H H19 N N N 0 6.251 -3.045 1.221
57 H20 H H20 N N N 0 4.592 -9.113 -0.835