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PDBsum entry 6y5d
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Immune system
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PDB id
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6y5d
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Contents |
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96 a.a.
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81 a.a.
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107 a.a.
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93 a.a.
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362 a.a.
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77 a.a.
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Generate full PROCHECK analyses
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PROCHECK summary for 6y5d
Ramachandran plot
PROCHECK statistics
1. Ramachandran Plot statistics
No. of
residues %-tage
------ ------
Most favoured regions [A,B,L] 1885 94.5%
Additional allowed regions [a,b,l,p] 100 5.0%
Generously allowed regions [~a,~b,~l,~p] 7 0.4%
Disallowed regions [XX] 2 0.1%*
---- ------
Non-glycine and non-proline residues 1994 100.0%
End-residues (excl. Gly and Pro) 26
Glycine residues 130
Proline residues 68
----
Total number of residues 2218
Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good
quality model would be expected to have over 90% in the most favoured regions [A,B,L].
2. G-Factors
Average
Parameter Score Score
--------- ----- -----
Dihedral angles:-
Phi-psi distribution 0.25
Chi1-chi2 distribution 0.44
Chi1 only 0.39
Chi3 & chi4 0.56
Omega -0.03
0.26
=====
Main-chain covalent forces:-
Main-chain bond lengths 0.53
Main-chain bond angles 0.40
0.45
=====
OVERALL AVERAGE 0.34
=====
G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.
Values below -0.5* - unusual
Values below -1.0** - highly unusual
Important note: The main-chain
bond-lengths and bond angles are compared with
the Engh & Huber (1991) ideal values derived
from small-molecule data. Therefore, structures
refined using different restraints may show
apparently large deviations from normality.
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