PDBsum entry 6y5d Go to PDB code:  Tunnel analysis for: 6y5d calculated with MOLE 2.0 PDB id 6y5d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 2.63 141.4 -0.44 -0.03 18.5 78 13 4 3 15 5 0 0  PTD 201 C PTD 302 H DA 32 I DG 117 I DG 40 J DG 41 J DG 42 J DC 117 J DC 118 J 2 2.71 2.71 16.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  DT 150 I DG 151 I DA 152 I DA 4 J DC 5 J DA 6 J DG 7 J DG 8 J 3 2.60 2.60 19.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  DG 149 I DT 150 I DG 151 I DA 152 I DT 153 I DC 5 J DA 6 J Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.