Ligand clusters for UniProt code Q9UNA4

Ligand clusters for Q9UNA4: DNA polymerase iota from Homo sapiens

		Top 6 (of 8) ligand clusters Cluster 1. 16 ligand types 85 ligands Cluster 2. 1 ligand type 4 ligands Cluster 3. 1 ligand type 2 ligands Cluster 4. 4 ligand types 17 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 1zetA

Structures

PDB		Schematic diagram
1zetA
5kt6A
3q8pB
4fs2A
5kt7A
		more ...

Cluster 1 contains 16 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: TTP × 3 Thymidine-5'-Triphosphate PDB codes: 1zet(A), 2dpj(A), 2fll(A).
		2. Ligand: DCP × 2 2'-Deoxycytidine-5'-Triphosphate PDB codes: 2alz(A), 2dpi(A).
_Mg		3. Metal: _MG × 37 PDB codes: 1zet(A), 2alz(A), 2dpi(A), 2dpj(A), 2fll(A), 3g6v(A), 3g6y(A), 3gv7(B), 3gv8(B), 3h4d(A), 3osn(A), 3q8p(B), 3q8q(B), 3q8r(B), 3q8s(B), 4eyh(B), 4eyi(B), 4fs1(A), 4fs2(A), 5kt2(A), 5kt4(A), 5kt6(A), 5ulw(A).
_Mn		4. Metal: _MN × 6 PDB codes: 5kt3(A), 5kt5(A), 5kt7(A),
		5. Ligand: TTP × 6 Thymidine-5'-Triphosphate PDB codes: 3g6y(A), 3gv7(B), 3osn(A), 3q8s(B), 4fs1(A), 5ulw(A).
		6. Ligand: DCP × 5 2'-Deoxycytidine-5'-Triphosphate PDB codes: 3epg(A), 3ngd(A), 3q8p(B), 4eyh(B), 4fs2(A).
_Ca		7. Metal: _CA × 7 PDB codes: 3gv5(B), 4ebc(A), 4ebd(A), 4ebe(A),
		8. Ligand: 0KX × 6 2'-Deoxy-5'-O-[(R)-Hydroxy{[(r)-Hydroxy(phosphonooxy) phosphoryl]amino}phosphoryl]cytidine PDB codes: 5kt2(A), 5kt3(A), 5kt4(A), 5kt5(A), 5kt6(A), 5kt7(A).
		9. Ligand: DTP × 4 2'-Deoxyadenosine 5'-Triphosphate PDB codes: 3h4b(A), 3q8q(B), 4ebe(A), 4eyi(B).
		10. Ligand: DGT × 3 2'-Deoxyguanosine-5'-Triphosphate PDB codes: 3gv8(B), 3h4d(A), 3q8r(B).
		11. Ligand: 0OH × 1 North-Methanocarba-2'-Deoxyadenosine triphosphate PDB code: 4ebc(A).
		12. Ligand: 0OJ × 1 South-Methanocarba-2'-Deoxyadenosine triphosphate PDB code: 4ebd(A).
		13. Ligand: ADI × 1 2',3'-Dideoxyadenosine-5'-Diphosphate PDB code: 3gv5(B).
		14. Ligand: ATP × 1 Adenosine-5'-Triphosphate PDB code: 3g6v(A).
		15. Ligand: PO4 × 1 Phosphate ion PDB code: 3epi(A).
		16. Ligand: SO4 × 1 Sulfate ion PDB code: 3h40(A).

Cluster 2 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 3gv5(B), 4ebc(A), 4ebd(A), 4ebe(A).

Cluster 3 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 4ebd(A), 4ebe(A).

Cluster 4 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Mg		1. Metal: _MG × 8 PDB codes: 3q8p(B), 3q8q(B), 3q8r(B), 3q8s(B), 4eyh(B), 4eyi(B), 4fs1(A), 5kt2(A).
_Mn		2. Metal: _MN × 1 PDB code: 5kt3(A).
_Ca		3. Metal: _CA × 4 PDB codes: 3gv5(B), 4ebc(A), 4ebd(A), 4ebe(A).
_Na		4. Metal: _NA × 4 PDB codes: 3epg(A), 3epi(A), 3osn(A), 4fs2(A).

Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Ca		1. Metal: _CA × 1 PDB code: 3gv5(B).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Na		1. Metal: _NA × 1 PDB code: 4fs1(A).