Ligand clusters for UniProt code Q8DIN9

Ligand clusters for Q8DIN9: Cytochrome b559 subunit beta from Thermosynechococcus elongatus (strain BP-1)

		2 ligand clusters Cluster 1. 14 ligand types 173 ligands Cluster 2. 2 ligand types 12 ligands
Representative protein: 3kziF

Structures

PDB		Schematic diagram
3kziF
7nhqF
4pj0F
5tisF
5mx2F
		more ...

Cluster 1 contains 14 ligand types

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Ligand		Description
		1. Ligand: BCR × 32 beta carotene Beta-Carotene PDB codes: 1s5l(F), 1w5c(F), 2axt(F), 3bz1(F), 3bz2(F), 3kzi(F), 3prq(F), 3prr(F), 4fby(F), 4ixq(F), 4ixr(F), 4pbu(F), 4pj0(F), 4rvy(F), 4tnh(F), 4tni(F), 4tnj(F), 4tnk(F), 5e79(F), 5e7c(F), 5h2f(F), 5kaf(F), 5kai(F), 5mx2(F), 5tis(F), 5zzn(F), 7nho(F), 7nhp(F), 7nhq(F).
		2. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 5zzn(f).
		3. Ligand: PL9 × 32 2,3-Dimethyl-5-(3,7,11,15,19,23,27,31,35-Nonamethyl-2, 6,10,14,18,22,26,30,34- Hexatriacontanonaenyl-2,5- Cyclohexadiene-1,4-Dione-2,3-Dimethyl-5-Solanesyl-1,4- Benzoquinone PDB codes: 3bz1(F), 3bz2(F), 4fby(F), 4ixq(F), 4ixr(F), 4pbu(F), 4pj0(F), 4rvy(F), 4tnh(F), 4tni(F), 4tnj(F), 4tnk(F), 5e79(F), 5e7c(F), 5h2f(f), 5kaf(F), 5kai(F), 5mx2(F), 5tis(F), 5zzn(F),
		4. Ligand: HEM × 31 Protoporphyrin IX containing fe PDB codes: 1w5c(F), 2axt(F), 3bz1(F), 3bz2(F), 3kzi(F), 3prq(F), 3prr(F), 4fby(F), 4ixq(F), 4ixr(F), 4pbu(F), 4pj0(F), 4rvy(F), 4tnh(F), 4tni(F), 4tnj(F), 4tnk(F), 5e79(F), 5e7c(F), 5h2f(F), 5kaf(F), 5kai(F), 5mx2(F), 5tis(F), 5zzn(F), 7nho(F), 7nhp(F), 7nhq(F).
		5. Ligand: LMG × 28 1,2-Distearoyl-Monogalactosyl-Diglyceride PDB codes: 3bz1(F), 3bz2(F), 3kzi(F), 3prq(F), 3prr(F), 4fby(F), 4ixq(F), 4ixr(F), 4pj0(F), 4rvy(F), 4tnh(F), 4tni(F), 4tnj(F), 4tnk(F), 5e79(F), 5e7c(F), 5h2f(F), 5kaf(F), 5kai(F), 5mx2(F), 5tis(F), 5zzn(F), 7nho(F), 7nhp(F), 7nhq(F).
		6. Ligand: SQD × 24 1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol PDB codes: 3bz1(F), 3bz2(F), 3kzi(F), 3prq(F), 3prr(F), 4fby(F), 4ixq(F), 4ixr(F), 4pbu(F), 4pj0(F), 4rvy(F), 4tnh(F), 4tni(F), 4tnj(F), 4tnk(F), 5e79(F), 5e7c(F), 5h2f(f), 5kaf(F), 5kai(F), 5mx2(F), 5tis(F).
		7. Ligand: LHG × 10 1,2-Dipalmitoyl-Phosphatidyl-Glycerole PDB codes: 4pbu(f), 4pj0(F), 4rvy(F), 5e79(F), 5e7c(F), 5mx2(F), 5zzn(F),
		8. Ligand: DGD × 5 Digalactosyl diacyl glycerol (dgdg) PDB codes: 3kzi(F), 3prq(F), 3prr(F), 4ixq(F), 5h2f(F).
		9. Ligand: CLA × 3 Chlorophyll a PDB codes: 4pbu(F), 5e7c(F).
		10. Ligand: LMT × 3 Dodecyl-Beta-D-Maltoside PDB codes: 5h2f(F), 5zzn(F).
		11. Ligand: HEC × 1 Heme c PDB code: 1s5l(F).
		12. Ligand: MGE × 1 (1s)-2-(Alpha-L-Allopyranosyloxy)-1-[(Tridecanoyloxy) methyl]ethyl palmitate PDB code: 2axt(F).
		13. Ligand: UNK × 1 PDB code: 2axt(F).
		14. Ligand: UNL × 1 Unknown ligand PDB code: 5zzn(F).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: DMS × 5 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5h2f(f), 5zzn(F),
_Ca		2. Metal: _CA × 7 PDB codes: 3kzi(F), 3prq(F), 3prr(F), 4pbu(F), 4rvy(F), 5e79(F).