Ligand clusters for UniProt code Q8DIF8

Ligand clusters for Q8DIF8: Photosystem II CP43 reaction center protein from Thermosynechococcus elongatus (strain BP-1)

		Top 6 (of 19) ligand clusters Cluster 1. 13 ligand types 723 ligands Cluster 2. 1 ligand type 12 ligands Cluster 3. 3 ligand types 24 ligands Cluster 4. 2 ligand types 4 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 6 ligands
Representative protein: 4pbuC

Structures

PDB		Schematic diagram
4pbuC
4rvyC
5kaiC
5kafC
5tisC
		more ...

Cluster 1 contains 13 ligand types

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Ligand		Description
		1. Ligand: BCR × 94 beta carotene Beta-Carotene PDB codes: 1izl(C), 1s5l(C), 2axt(C), 3bz1(C), 3bz2(C), 3kzi(C), 3prq(C), 3prr(C), 4fby(C), 4ixq(C), 4ixr(C), 4pbu(C), 4pj0(C), 4rvy(C), 4tnh(C), 4tni(C), 4tnj(C), 4tnk(C), 5e79(C), 5e7c(C), 5h2f(C), 5kaf(C), 5kai(C), 5mx2(C), 5tis(C), 5zzn(C), 7nho(C), 7nhp(C), 7nhq(C),
		2. Ligand: DMS × 6 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5h2f(C), 5zzn(C),
		3. Ligand: CLA × 392 Chlorophyll a PDB codes: 1izl(C), 1s5l(C), 1w5c(C), 2axt(C), 3bz1(C), 3bz2(C), 3kzi(C), 3prq(C), 3prr(C), 4fby(C), 4ixq(C), 4ixr(C), 4pbu(C), 4pj0(C), 4rvy(C), 4tnh(C), 4tni(C), 4tnj(C), 4tnk(C), 5e79(C), 5e7c(C), 5h2f(C), 5kaf(C), 5kai(C), 5mx2(C), 5tis(C), 5zzn(C), 7nho(C), 7nhp(C), 7nhq(C),
		4. Ligand: DGD × 84 Digalactosyl diacyl glycerol (dgdg) PDB codes: 2axt(C), 3bz1(C), 3bz2(C), 3kzi(C), 3prq(C), 3prr(C), 4fby(C), 4ixq(C), 4ixr(C), 4pbu(C), 4pj0(C), 4rvy(C), 4tnh(C), 4tni(C), 4tnj(C), 4tnk(C), 5e79(C), 5e7c(C), 5h2f(C), 5kaf(C), 5kai(C), 5mx2(C), 5tis(C), 5zzn(C),
		5. Ligand: LMG × 62 1,2-Distearoyl-Monogalactosyl-Diglyceride PDB codes: 3bz1(C), 3bz2(C), 3kzi(C), 3prq(C), 3prr(C), 4fby(C), 4ixq(C), 4ixr(C), 4pj0(C), 4rvy(C), 4tnh(C), 4tni(C), 4tnj(C), 4tnk(C), 5e79(C), 5e7c(C), 5h2f(C), 5kaf(C), 5kai(C), 5mx2(C), 5tis(C), 5zzn(C), 7nho(C), 7nhp(C), 7nhq(C),
		6. Ligand: LHG × 39 1,2-Dipalmitoyl-Phosphatidyl-Glycerole PDB codes: 2axt(C), 3bz1(C), 3bz2(C), 3kzi(C), 3prq(C), 3prr(C), 4fby(C), 4ixq(C), 4ixr(C), 4pbu(C), 4pj0(C), 4rvy(C), 4tnh(C), 4tni(C), 4tnj(C), 4tnk(C), 5e79(C), 5e7c(C), 5h2f(C), 5kaf(C), 5kai(C), 5mx2(C), 5tis(C), 5zzn(C), 7nho(C), 7nhp(C), 7nhq(C).
		7. Ligand: SQD × 23 1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol PDB codes: 2axt(C), 3bz1(C), 3bz2(C), 3kzi(C), 3prq(C), 3prr(C), 4fby(C), 4ixq(C), 4ixr(C), 4pbu(C), 4pj0(C), 4rvy(C), 4tnh(C), 4tni(C), 4tnj(C), 4tnk(C), 5e79(C), 5e7c(C), 5h2f(C), 5kaf(C), 5kai(C), 5mx2(C), 5tis(C).
		8. Ligand: HTG × 7 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB codes: 5h2f(C), 5zzn(C),
		9. Ligand: LMT × 6 Dodecyl-Beta-D-Maltoside PDB codes: 3prq(C), 3prr(C), 5h2f(C), 5zzn(C),
		10. Ligand: UNL × 6 Unknown ligand PDB codes: 4pj0(C), 5kaf(C), 5tis(C), 5zzn(C),
		11. Ligand: UNK × 2 PDB codes: 2axt(C),
		12. Ligand: LFA × 1 Eicosane PDB code: 5mx2(C).
		13. Ligand: MGE × 1 (1s)-2-(Alpha-L-Allopyranosyloxy)-1-[(Tridecanoyloxy) methyl]ethyl palmitate PDB code: 2axt(C).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: HEM × 12 Protoporphyrin IX containing fe PDB codes: 3kzi(C), 3prq(C), 3prr(C), 4fby(C), 4ixq(C), 4ixr(C), 4tnh(C), 4tni(C), 4tnj(C), 4tnk(C), 5e79(C), 5e7c(C).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: OEX × 14 Ca-Mn4-O5 cluster PDB codes: 4pbu(C), 4pj0(C), 4rvy(C), 4tnh(C), 4tni(C), 4tnj(C), 4tnk(C), 5e79(C), 5e7c(C), 5h2f(C), 5kaf(C), 5kai(C), 5tis(C), 5zzn(C).
		2. Ligand: OEC × 9 Oxygen evolving system PDB codes: 2axt(C), 3bz1(C), 3bz2(C), 3kzi(C), 3prq(C), 3prr(C), 4fby(C), 4ixq(C), 4ixr(C).
		3. Ligand: BCT-OEC × 1 BCT=Bicarbonate ion, OEC=Oxygen evolving system. PDB code: 1s5l(C).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: DMS × 3 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 3prq(C), 3prr(C), 5h2f(C).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 5zzn(C).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 4pj0(C).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: DMS × 6 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5h2f(C), 5zzn(C),