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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code P9WG57
Ligand clusters for P9WG57: Flavin-dependent thymidylate synthase from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Top 6 (of 10) ligand clusters
Cluster 1.
7 ligand types
16 ligands
Cluster 2.
5 ligand types
8 ligands
Cluster 3.
1 ligand type
3 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3gwcA
Structures
PDB
Schematic diagram
3gwc
A
3hzg
A
2af6
A
2gq2
B
2gq2
A
Cluster 1 contains 7 ligand types
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Ligand
Description
1. Ligand:
FAD × 6
flavin adenine dinucleotide
Flavin-Adenine dinucleotide
PDB codes:
2af6
(A),
3gwc
(A),
3hzg
(A),
2. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
2af6
(A).
3. Ligand:
BRU × 1
5-Bromo-2'-Deoxyuridine-5'-Monophosphate
PDB code:
2af6
(A).
4. Ligand:
NAP × 4
Nadp nicotinamide-Adenine-Dinucleotide phosphate
PDB codes:
2gq2
(A),
5. Ligand:
PO4 × 2
Phosphate ion
PDB codes:
3hzg
(A),
6. Ligand:
PGE × 1
Triethylene glycol
PDB code:
2gq2
(A).
7. Ligand:
UFP × 1
5-Fluoro-2'-Deoxyuridine-5'-Monophosphate
PDB code:
3gwc
(A).
Cluster 2 contains 5 ligand types
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Ligand
Description
1. Ligand:
FAD × 3
flavin adenine dinucleotide
Flavin-Adenine dinucleotide
PDB codes:
2af6
(A),
3gwc
(A),
3hzg
(A).
2. Ligand:
BRU × 1
5-Bromo-2'-Deoxyuridine-5'-Monophosphate
PDB code:
2af6
(A).
3. Ligand:
NAP × 2
Nadp nicotinamide-Adenine-Dinucleotide phosphate
PDB codes:
2gq2
(A),
4. Ligand:
PO4 × 1
Phosphate ion
PDB code:
3hzg
(A).
5. Ligand:
UFP × 1
5-Fluoro-2'-Deoxyuridine-5'-Monophosphate
PDB code:
3gwc
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 3
glycerin
Glycerol
PDB codes:
2af6
(A),
2gq2
(A),
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
2af6
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
2gq2
(B).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3hzg
(A).