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Ligand clusters for UniProt code P83793

Ligand clusters for P83793: Cytochrome f from Mastigocladus laminosus

Top 6 (of 8) ligand clusters
Cluster 1.
4 ligand types
10 ligands
Cluster 2.
3 ligand types
7 ligands
Cluster 3.
2 ligand types
7 ligands
Cluster 4.
2 ligand types
9 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
6 ligands
Representative protein: 2e74C  
JSmol
 

Structures

PDB   Schematic diagram
2e74C    
2e75C    
2e76C    
4h0lC    
4h13C    
 more ...

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: OPC × 1
(7r,17e)-4-Hydroxy-N,N,N,7-Tetramethyl-7-[(8e)-Octadec- 8-Enoyloxy]-10-Oxo-3,5,9-Trioxa-4-
Phosphaheptacos-17- En-1-Aminium 4-Oxide
PDB code: 2d2c(C).


 
2. Ligand: SQD × 6
1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol
PDB codes: 2e74(C), 2e75(C), 2e76(C), 4h0l(C), 4h13(C), 4pv1(C).


 
3. Ligand: UMQ × 2
Undecyl-Maltoside
PDB codes: 4h0l(C), 4i7z(C).


 
4. Ligand: 1E2 × 1
(2s)-3-(Acetyloxy)-2-Hydroxypropyl 6-Deoxy-6-Sulfo- Beta-D-Glucopyranoside
PDB code: 4i7z(C).

 

 Cluster 2 contains 3 ligand types

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Ligand Description


 
1. Ligand: UMQ × 4
Undecyl-Maltoside
PDB codes: 2e74(C), 2e75(C), 2e76(C), 4h0l(C).


 
2. Ligand: 7PH × 2
(1r)-2-(Dodecanoyloxy)-1-[(Phosphonooxy)methyl]ethyl tetradecanoate
PDB codes: 4h13(C), 4pv1(C).


 
3. Ligand: OZ2 × 1
(2r)-3-{[(R)-{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-2-[(6z)-Tridec-6-
Enoyloxy]propyl (9z)- Octadec-9-Enoate
PDB code: 4i7z(C).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: OPC × 6
(7r,17e)-4-Hydroxy-N,N,N,7-Tetramethyl-7-[(8e)-Octadec- 8-Enoyloxy]-10-Oxo-3,5,9-Trioxa-4-
Phosphaheptacos-17- En-1-Aminium 4-Oxide
PDB codes: 2e74(C), 2e75(C), 2e76(C), 4h0l(C), 4h13(C), 4pv1(C).


 
2. Ligand: OZ2 × 1
(2r)-3-{[(R)-{[(2s)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-2-[(6z)-Tridec-6-
Enoyloxy]propyl (9z)- Octadec-9-Enoate
PDB code: 4i7z(C).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: HEM × 8
Protoporphyrin IX containing fe
PDB codes: 1vf5(C), 2d2c(C), 2e74(C), 2e75(C), 2e76(C), 4h0l(C), 4h13(C), 4i7z(C).


 
2. Ligand: HEC × 1
Heme c
PDB code: 4pv1(C).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: BNT × 1
2,5-Dibromo-3-Isopropyl-6-Methylbenzo-1,4-Quinone
PDB code: 2d2c(C).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Cd
 
1. Metal: _CD × 6
PDB codes: 2e74(C), 2e75(C), 2e76(C), 4h0l(C), 4h13(C), 4i7z(C).

 

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